View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7596_low_13 (Length: 279)

Name: NF7596_low_13
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7596_low_13
NF7596_low_13
[»] chr5 (13 HSPs)
chr5 (1-264)||(31332204-31332471)
chr5 (1-264)||(31380989-31381256)
chr5 (14-216)||(31317376-31317577)
chr5 (14-215)||(31368590-31368790)
chr5 (8-113)||(31284729-31284834)
chr5 (8-120)||(31281445-31281557)
chr5 (1-120)||(31279452-31279571)
chr5 (3-104)||(31475924-31476025)
chr5 (3-104)||(40843306-40843407)
chr5 (2-105)||(31643862-31643965)
chr5 (214-264)||(31317648-31317698)
chr5 (3-71)||(31416562-31416630)
chr5 (11-71)||(31494139-31494199)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 31332204 - 31332471
Alignment:
Q  1 gttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttca 100  Q
    |||||| ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31332204 gttgttggactgctttgttatgctttaagctcttccttcaactacctctttggagaatggaatttgttgaaaatatttctctacagtgctttcagtttca 31332303  T
Q  101 tcatctgcttggtcattttaatttatatgcaaagaaattgcaatattatagaagtctctgatttaaagc----gcggcatttttggtattgacactcact 196  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||     ||||||||||||||||||||||||||    
T  31332304 tcatctgcttggtcattttaatttatatgcaaagaaattgcaacataatagaagtctccgatttaaagctcattcggcatttttggtattgacactcact 31332403  T
Q  197 tcaatctattcatttttcttagtttgtcaaggcaaactcagtgcggaatcaaaatcgatcttctttat 264  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  31332404 tcagtctattcatttttcttagtttgtcaaggcaaactcagtgcggattcgaaatcgatcttctttat 31332471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 31380989 - 31381256
Alignment:
Q  1 gttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttca 100  Q
    |||||| ||||||||||||||||||| | |||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31380989 gttgttggactgctttgttatgctttgagctcttccttcaattacctctttggagaatggaatttgttgaaaatatttctctacagtgctttcagtttca 31381088  T
Q  101 tcatctgcttggtcattttaatttatatgcaaagaaattgcaatattatagaagtctctgatttaaagc----gcggcatttttggtattgacactcact 196  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||     ||||||||||||||||||||||||||    
T  31381089 tcatctgcttggtcattttaatttatattcaaagaaattgcaacattatagaagtctccgatttaaagctcattcggcatttttggtattgacactcact 31381188  T
Q  197 tcaatctattcatttttcttagtttgtcaaggcaaactcagtgcggaatcaaaatcgatcttctttat 264  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  31381189 tcagtctattcatttttcttagtttgtcaaggaaaactcagtgcggattcgaaatcgatcttctttat 31381256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 31317376 - 31317577
Alignment:
Q  14 tttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttcatcatctgcttggt 113  Q
    |||| ||||| |||| |||||| || ||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  31317376 tttgctatgcattaagctcttcctttaactatctctttggagaatggaatttgttgaaaatatttctttacagcgctttcagtttcatcatctgcttggt 31317475  T
Q  114 cattttaatttatatgcaaagaaattgcaatattatagaagtctctgatttaaagc----gcggcatttttggtattgacactcacttcaatctattcat 209  Q
     ||     ||||| |||||||||||||||| ||| ||| |||||  |||| |||||     |||||||| |||||||||||||||||||||||||||| |    
T  31317476 gat-----tttatttgcaaagaaattgcaacattctagcagtcttcgattcaaagctcattcggcatttctggtattgacactcacttcaatctattcct 31317570  T
Q  210 ttttctt 216  Q
    |||||||    
T  31317571 ttttctt 31317577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 31368590 - 31368790
Alignment:
Q  14 tttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttcatcatctgcttggt 113  Q
    |||| |||||||||| |||||| || ||| | |||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  31368590 tttgctatgctttaagctcttcctttaactatctctttggagaatgaaatttgttgaaaatatttctttacagcgctgtcagtttcatcatctgcttggt 31368689  T
Q  114 cattttaatttatatgcaaagaaattgcaatattatagaagtctctgatttaaagc----gcggcatttttggtattgacactcacttcaatctattcat 209  Q
     ||     ||||| |||| ||||||||||| ||| |||||||||| |||| |||||     |||||||| |||||||||||||||||| ||||||||| |    
T  31368690 gat-----tttatttgcacagaaattgcaacattctagaagtctccgattcaaagctcattcggcatttctggtattgacactcactttaatctattcct 31368784  T
Q  210 ttttct 215  Q
    ||||||    
T  31368785 ttttct 31368790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 31284729 - 31284834
Alignment:
Q  8 gactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttcatcatctg 107  Q
    ||||||||||||||||| ||| |||||| |||||| | ||||||||||| |||||| || |||| ||| | ||||||||   |||||| ||||||||| |    
T  31284729 gactgctttgttatgctctaagctcttccttcaactatctctttggagactggaatctgctgaagataatcctctacagcattttcagcttcatcatcag 31284828  T
Q  108 cttggt 113  Q
    ||||||    
T  31284829 cttggt 31284834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 31281445 - 31281557
Alignment:
Q  8 gactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttcatcatctg 107  Q
    |||| |||||||||||||||| |||||| |||||  | ||||||||||| |||||||||||||| || || || ||| | | |||||| ||||||||  |    
T  31281445 gacttctttgttatgctttaagctcttccttcaattatctctttggagattggaatttgttgaagattttcctttacggcgttttcagcttcatcattag 31281544  T
Q  108 cttggtcatttta 120  Q
    ||||||| |||||    
T  31281545 cttggtcgtttta 31281557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 31279571 - 31279452
Alignment:
Q  1 gttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttca 100  Q
    |||||| ||||| ||||||||||| | | |||||| |||||| | |||||||||||||||||||| ||||| || || || ||| | | |||||| ||||    
T  31279571 gttgttggactggtttgttatgctctcagctcttccttcaactatctctttggagaatggaatttcttgaagattttcctttacggcgttttcagcttca 31279472  T
Q  101 tcatctgcttggtcatttta 120  Q
    ||||  |||||||| |||||    
T  31279471 tcattagcttggtcgtttta 31279452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 31476025 - 31475924
Alignment:
Q  3 tgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttcatc 102  Q
    |||| ||||||||||||||||| ||| |||||| || ||| | || |||||| | |||||||||||||| ||| |||| ||||  | |||||||||||||    
T  31476025 tgttggactgctttgttatgctctaagctcttcctttaactatctatttggaaactggaatttgttgaagataattctttacactgttttcagtttcatc 31475926  T
Q  103 at 104  Q
    ||    
T  31475925 at 31475924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 40843407 - 40843306
Alignment:
Q  3 tgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttcatc 102  Q
    |||| ||||| ||||||||||| ||| |||||| |||||| | || |||||| | |||||||||||||| ||| |||| ||||  | |||||||||||||    
T  40843407 tgttggactggtttgttatgctctaagctcttccttcaactatctatttggaaattggaatttgttgaagataattctttacactgttttcagtttcatc 40843308  T
Q  103 at 104  Q
    ||    
T  40843307 at 40843306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 31643965 - 31643862
Alignment:
Q  2 ttgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaaaatatttctctacagggctttcagtttcat 101  Q
    ||||| |||| |||||||||||| | | |||||| |||||| | || |||||||| |||||| ||||||| || || || ||||| | ||||||||||||    
T  31643965 ttgttggactactttgttatgctcttagctcttccttcaactatctatttggagattggaatctgttgaagattttcctttacagcgttttcagtttcat 31643866  T
Q  102 catc 105  Q
    ||||    
T  31643865 catc 31643862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 31317648 - 31317698
Alignment:
Q  214 cttagtttgtcaaggcaaactcagtgcggaatcaaaatcgatcttctttat 264  Q
    |||||||||||||||||||||||||| ||| |  |||| ||||||||||||    
T  31317648 cttagtttgtcaaggcaaactcagtggggatttgaaattgatcttctttat 31317698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 31416630 - 31416562
Alignment:
Q  3 tgttagactgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaa 71  Q
    |||| ||||| ||||||||||| ||| |||||| |||||| | || |||||| | ||||||||||||||    
T  31416630 tgttggactgatttgttatgctctaagctcttctttcaaccatctatttggaaattggaatttgttgaa 31416562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 31494199 - 31494139
Alignment:
Q  11 tgctttgttatgctttaaactcttcattcaacaacctctttggagaatggaatttgttgaa 71  Q
    |||||||||||||| ||| |||||| |||||| | || |||||| | ||||||||||||||    
T  31494199 tgctttgttatgctctaagctcttcgttcaaccatctatttggaaattggaatttgttgaa 31494139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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