View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7596_low_15 (Length: 273)
Name: NF7596_low_15
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7596_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 31380748 - 31380988
Alignment:
| Q |
20 |
atgtgacattcccaacttaacgtcacggacgtgataaccagtgctttagtcccttccaagaaatttcagctggaat-gtgacaacttctcgcagccgaag |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31380748 |
atgtgacattcccgccttaacgtcacggacgtgataaccagtgctttagtcccttccaagaaatttcagctggaatagtgacaacttctcgcagccgaag |
31380847 |
T |
|
| Q |
119 |
tcaaaaatggttggtctttctcccactccatctttgaaattgatcattacacactttacacaacatggcacatattctaatccaaattggagatggatga |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31380848 |
tcaaaaatggttggtctctctcccactccatctttgaaattgatcattacacactttacacaacatggcacatattctaatccaaattggagatggatga |
31380947 |
T |
|
| Q |
219 |
tgttgccaaaggtgtggagatttgttggctttgcttcatct |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
31380948 |
tgttgccaaaggtgtggagatttgttggctttgcttcatct |
31380988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 31331963 - 31332203
Alignment:
| Q |
20 |
atgtgacattcccaacttaacgtcacggacgtgataaccagtgctttagtcccttccaagaaatttcagctggaat-gtgacaacttctcgcagccgaag |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31331963 |
atgtgacattcccgccttaacgtcacggacgtgataaccagtactttagtcccttccaagaaatttcagctggaacagtgacaacttctcgcagccgaag |
31332062 |
T |
|
| Q |
119 |
tcaaaaatggttggtctttctcccactccatctttgaaattgatcattacacactttacacaacatggcacatattctaatccaaattggagatggatga |
218 |
Q |
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| T |
31332063 |
taaaaaatggttggtctctctcccactccatctttgaaattgatcattacacactttacacaacatggcacatattctaatccaaattggagatggatga |
31332162 |
T |
|
| Q |
219 |
tgttgccaaaggtgtggagatttgttggctttgcttcatct |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332163 |
tgttgccaaaggtgtggagatttgttggctttgcttcatct |
31332203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 102 - 260
Target Start/End: Original strand, 31368418 - 31368577
Alignment:
| Q |
102 |
acttctcgcagccgaagtcaaaaatggttggtctttctcccactccatctttgaaattgatcattacacactttacacaacatggcacatattctaatcc |
201 |
Q |
| |
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||||||| ||| ||||||||||| |||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |
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| T |
31368418 |
acttctcacagacgaagtcaaaattggttggtctcactctcactccatctttgaaattaatccttacacacttgacacaacatggcacatattctaatcc |
31368517 |
T |
|
| Q |
202 |
aaa-ttggagatggatgatgttgccaaaggtgtggagatttgttggctttgcttcatctc |
260 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31368518 |
aaacatggagatggatgatgttgccaaaggtgtggagatttgtgggctttgcttcatctc |
31368577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 31317180 - 31317363
Alignment:
| Q |
79 |
gaaatttcagctggaat-gtgacaacttctcgcagccgaagtcaaaaatggttggtctttctcccactccatctttgaaattgatcattacacactttac |
177 |
Q |
| |
|
||||||||||||| || |||| |||||||| || |||||||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| || |
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| T |
31317180 |
gaaatttcagctgaaagagtgataacttctcacacacgaagtcaaaaatggttggtctcactctcactctatctttgaaattaatccttacacacttgac |
31317279 |
T |
|
| Q |
178 |
acaacatggcacatattctaatccaaa-ttggagatggatgatgttgccaaaggtgtggagatttgttggctttgcttcatctc |
260 |
Q |
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|
||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31317280 |
acaacatggtgcatactctaatccaaacatggagatggatgatgttgccaaaggtgtggagatttgtgggctttgcttcatctc |
31317363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 259
Target Start/End: Original strand, 31284523 - 31284721
Alignment:
| Q |
63 |
ctttagtcccttccaagaaatttcagctggaat-gtgacaacttctcgcagccgaagtcaaaaatggttggtctttctcccactccatctttgaaattga |
161 |
Q |
| |
|
|||||||||||||| ||||||||||||| || || | |||||||| || ||||| ||||||||||||| | | |||||||||||||||||| | |
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| T |
31284523 |
ctttagtcccttcctcgaaatttcagctgaaagagtaataacttctcacacatgaagtaaaaaatggttggtttcagtatcactccatctttgaaattaa |
31284622 |
T |
|
| Q |
162 |
tcattacacactttacacaacatggcacatattctaatccaaa-ttggagatggatgatgttgccaaaggtgtggagatttgttggctttgcttcatct |
259 |
Q |
| |
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|| ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||||| |
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| T |
31284623 |
tccttacacatttgacacaacatggcacatattctaatccaaacatggagatggatgatgcagccaaaagtgtggagatttgtgggctttgcttcatct |
31284721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 31313135 - 31313244
Alignment:
| Q |
145 |
tccatctttgaaattgatcattacacactttacacaacatggcacatattctaatccaaatt-ggagatggatgatgttgccaaaggtgtggagatttgt |
243 |
Q |
| |
|
||||||| ||||||| || |||| ||||| | |||| ||| ||||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||| |
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| T |
31313135 |
tccatctgtgaaattaattcttactcacttcaaacaatatgacacatattctattccaaatttggagatgtatgatgctgccaaaggtgtggagatttgt |
31313234 |
T |
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| Q |
244 |
tggctttgct |
253 |
Q |
| |
|
|| |||||| |
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|
| T |
31313235 |
gggatttgct |
31313244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 31279642 - 31279575
Alignment:
| Q |
190 |
atattctaatccaaat-tggagatggatgatgttgccaaaggtgtggagatttgttggctttgcttca |
256 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |||||| |||||||||||||| |||||||||||| |
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|
| T |
31279642 |
atattctaatccaaatatggagatggttgatgcagccaaaagtgtggagatttgtaggctttgcttca |
31279575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 31288395 - 31288487
Alignment:
| Q |
165 |
ttacacactttacacaacatggcacatattctaatccaaat-tggagatggatgatgttgccaaaggtgtggagatttgttggctttgcttca |
256 |
Q |
| |
|
|||||||||| | |||| ||| | |||| |||||||||||| | ||||||| ||||| |||||| |||||||||||||| |||||||||||| |
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|
| T |
31288395 |
ttacacacttgagacaatatgacgcatactctaatccaaatatagagatggttgatgcagccaaaagtgtggagatttgtaggctttgcttca |
31288487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 31329857 - 31329910
Alignment:
| Q |
189 |
catattctaatccaaatt-ggagatggatgatgttgccaaaggtgtggagattt |
241 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
31329857 |
catattctattccaaatttggagatggatgatgcagccaaaggtgtggagattt |
31329910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 31362888 - 31362997
Alignment:
| Q |
145 |
tccatctttgaaattgatcattacacactttacacaacatggcacatattctaatccaaatt-ggagatggatgatgttgccaaaggtgtggagatttgt |
243 |
Q |
| |
|
||||||| ||||||| || ||||||||| | |||| ||| ||| | ||||| |||||||| ||||||| |||||| ||||||||||||||||||||| |
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|
| T |
31362888 |
tccatctgtgaaattaattgttacacactgcaaacaatatgtcacgtgttctattccaaatttggagatgtatgatgcagccaaaggtgtggagatttgt |
31362987 |
T |
|
| Q |
244 |
tggctttgct |
253 |
Q |
| |
|
|| |||||| |
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|
| T |
31362988 |
gggatttgct |
31362997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 31378639 - 31378692
Alignment:
| Q |
189 |
catattctaatccaaatt-ggagatggatgatgttgccaaaggtgtggagattt |
241 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
31378639 |
catattctattccaaatttggagatggatgatgcagccaaaggtgtggagattt |
31378692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 31281342 - 31281434
Alignment:
| Q |
165 |
ttacacactttacacaacatggcacatattctaatccaaat-tggagatggatgatgttgccaaaggtgtggagatttgttggctttgcttca |
256 |
Q |
| |
|
|||||||||| | |||| ||| ||| ||||||||||||||| ||||||||| ||||| || || ||||| || ||||| |||||||||||| |
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|
| T |
31281342 |
ttacacacttgagacaatatgacacgtattctaatccaaatatggagatggttgatgcacccgaaagtgtgcaggtttgtaggctttgcttca |
31281434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 31644003 - 31643967
Alignment:
| Q |
223 |
gccaaaggtgtggagatttgttggctttgcttcatct |
259 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
31644003 |
gccaaaggtatggagatttgtgggctttgcttcatct |
31643967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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