View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7596_low_16 (Length: 266)

Name: NF7596_low_16
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7596_low_16
NF7596_low_16
[»] chr7 (4 HSPs)
chr7 (5-244)||(44221720-44221983)
chr7 (1-141)||(11356171-11356317)
chr7 (5-86)||(23941236-23941317)
chr7 (88-135)||(23943786-23943833)
[»] chr1 (9 HSPs)
chr1 (1-141)||(16315288-16315433)
chr1 (5-124)||(30704472-30704596)
chr1 (1-66)||(12063473-12063538)
chr1 (86-135)||(12068037-12068086)
chr1 (1-86)||(23941528-23941613)
chr1 (89-135)||(39222596-39222642)
chr1 (89-135)||(46923671-46923717)
chr1 (86-135)||(7015043-7015092)
chr1 (89-134)||(30308273-30308318)
[»] chr5 (4 HSPs)
chr5 (1-135)||(20887828-20887967)
chr5 (5-141)||(35050416-35050555)
chr5 (1-140)||(29195988-29196132)
chr5 (1-78)||(32910486-32910563)
[»] chr4 (17 HSPs)
chr4 (1-142)||(50336353-50336501)
chr4 (1-143)||(5534237-5534384)
chr4 (1-144)||(33990592-33990740)
chr4 (1-143)||(12656346-12656493)
chr4 (1-135)||(43210151-43210290)
chr4 (1-86)||(1938473-1938558)
chr4 (1-85)||(157007-157091)
chr4 (1-39)||(50008958-50008996)
chr4 (89-135)||(21713312-21713358)
chr4 (89-135)||(31825876-31825922)
chr4 (86-135)||(1939423-1939472)
chr4 (86-135)||(22923376-22923425)
chr4 (86-135)||(22928029-22928078)
chr4 (86-135)||(22984308-22984357)
chr4 (86-135)||(22997896-22997945)
chr4 (86-135)||(54185665-54185714)
chr4 (88-120)||(156058-156090)
[»] chr8 (5 HSPs)
chr8 (1-143)||(41600951-41601098)
chr8 (1-78)||(22661800-22661877)
chr8 (86-135)||(37226993-37227042)
chr8 (89-135)||(43693712-43693758)
chr8 (86-122)||(4412616-4412652)
[»] chr2 (4 HSPs)
chr2 (1-121)||(9829505-9829630)
chr2 (86-135)||(5848148-5848197)
chr2 (86-135)||(19380277-19380326)
chr2 (89-135)||(43837513-43837559)
[»] chr3 (2 HSPs)
chr3 (5-81)||(30933960-30934036)
chr3 (86-135)||(46637115-46637164)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 44221983 - 44221720
Alignment:
Q  5 gttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttactta-------------------aggtgcgca 85  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                   |||||||||    
T  44221983 gttttatacgaaaacagtaacactgcgtcacttaatatgcgttgtgtgagttaagttgcgcagcgttacttaaggtgcacaacgttacttaaggtgcgca 44221884  T
Q  86 a-----aatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagcacgattcttaataaataaactaataagaaaaaagttgaagaagaaa 180  Q
    |     |||||  || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44221883 agggtaaatttaaaacggctgcagagcgcgagcaaaatgtgaagagtggagagcacgattcttaataaataaactaataagaaaaaagttgaagaagaaa 44221784  T
Q  181 agtggtcgaaatcatcaaagcactctcttggtgttggatgccacatcccctttaacatacatat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44221783 agtggtcgaaatcatcaaagcactctcttggtgttggatgccacatcccctttaacatacatat 44221720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 11356317 - 11356171
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgtt-acttaaggtgcgca-----aaatttgga 94  Q
    |||||||||| |||||||||||||||||||||||||||| ||| | || ||||||||||||| |||||||| ||||||||||||||     |||||| ||    
T  11356317 atgggttttgcacgaaaacagtaacactgcgtcacttaacatgcgctgcgtgagttaagttgtgcagcgttaacttaaggtgcgcaagggtaaatttaga 11356218  T
Q  95 atggctgcagagcgcgagcaaaatgtgcagagtggagagcacgattc 141  Q
    | |||||||| || |||||||||||||||  | |||||||| |||||    
T  11356217 acggctgcagggcacgagcaaaatgtgcatggcggagagcatgattc 11356171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 23941317 - 23941236
Alignment:
Q  5 gttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgcaa 86  Q
    |||||||||||||||||||||||||||| ||||||  |||| || ||||||||||| ||||| |||||||||||||| ||||    
T  23941317 gttttgtacgaaaacagtaacactgcgtgacttaacttgtggtgcgtgagttaagtagcgcaacgttacttaaggtgtgcaa 23941236  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 23943786 - 23943833
Alignment:
Q  88 atttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    |||| ||| |||||||||||||||||||||||||||| ||| ||||||    
T  23943786 atttagaacggctgcagagcgcgagcaaaatgtgcagggtgaagagca 23943833  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 16315288 - 16315433
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaa 95  Q
    ||||||||||||||||||||||||||||||||||||||| ||  | || ||||||||||||||||||||||||||||||||||||     ||||||||||    
T  16315288 atgggttttgtacgaaaacagtaacactgcgtcacttaacattcgctgcgtgagttaagttgcgcagcgttacttaaggtgcgcaaggataaatttggaa 16315387  T
Q  96 tggctgcagagcgcgagcaaaatgtgcagagtggagagcacgattc 141  Q
     ||||| || ||||||||||||||||||| |||||||||| |||||    
T  16315388 cggctgtagggcgcgagcaaaatgtgcagggtggagagcaggattc 16315433  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 30704472 - 30704596
Alignment:
Q  5 gttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaatggc 99  Q
    ||||||||||||||||||||||||| ||||||||| ||| | || |||||||||| |||||||||||||||||| || |||     |||||| ||| |||    
T  30704472 gttttgtacgaaaacagtaacactgtgtcacttaacatgcgctgcgtgagttaaggtgcgcagcgttacttaagatgtgcaatggtaaatttagaacggc 30704571  T
Q  100 tgcagagcgcgagcaaaatgtgcag 124  Q
    ||||| |||||||||||| ||||||    
T  30704572 tgcagggcgcgagcaaaaggtgcag 30704596  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12063538 - 12063473
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgca 66  Q
    ||||||||||||||||||||||||||||| |||||||||  || | || |||||||||| ||||||    
T  12063538 atgggttttgtacgaaaacagtaacactgtgtcacttaacttgcgctgcgtgagttaaggtgcgca 12063473  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 12068037 - 12068086
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    |||||||||| |||||||| ||||||||||||||||| | ||||||||||    
T  12068037 aaatttggaacggctgcagggcgcgagcaaaatgtgctgggtggagagca 12068086  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23941613 - 23941528
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgcaa 86  Q
    ||||||||||||| |||||||||||||||||| ||||||       || ||||||||||| ||||| |||||||||||||| ||||    
T  23941613 atgggttttgtacaaaaacagtaacactgcgtgacttaactcacactgcgtgagttaagtagcgcaacgttacttaaggtgtgcaa 23941528  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 39222642 - 39222596
Alignment:
Q  89 tttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||    
T  39222642 tttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagca 39222596  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 46923717 - 46923671
Alignment:
Q  89 tttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||    
T  46923717 tttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagca 46923671  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 7015043 - 7015092
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    |||||| ||| |||||||| ||||||||||||||||| | ||||||||||    
T  7015043 aaatttcgaacggctgcagggcgcgagcaaaatgtgctgggtggagagca 7015092  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 30308318 - 30308273
Alignment:
Q  89 tttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagc 134  Q
    ||||| |||||||||| ||||||||||||||||||| ||| |||||    
T  30308318 tttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagc 30308273  T

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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 20887828 - 20887967
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaa 95  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||| |||||||||||||| || ||||||||||||||||||     |||||| |||    
T  20887828 atgggttttgtacgaaaacagtaacactgtgtcacttaacatgcgttgcgtgagttaagttgcacaacgttacttaaggtgcgcaagggtaaatttcgaa 20887927  T
Q  96 tggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
     |||||||||||||||||||||||||||| ||||||||||    
T  20887928 cggctgcagagcgcgagcaaaatgtgcagggtggagagca 20887967  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 35050416 - 35050555
Alignment:
Q  5 gttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca---aaatttggaatggctg 101  Q
    |||||||||||||||||||||||||||||||||||  || | || |||||||||| |||||| ||||||||||||||||||   |||||| |||||| ||    
T  35050416 gttttgtacgaaaacagtaacactgcgtcacttaacttgcgctgcgtgagttaaggtgcgcaacgttacttaaggtgcgcatgtaaatttagaatggttg 35050515  T
Q  102 cagagcgcgagcaaaatgtgcagagtggagagcacgattc 141  Q
    ||| |||||| |||||||||||| |||||||||| |||||    
T  35050516 cagggcgcgaacaaaatgtgcagggtggagagcaggattc 35050555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 29195988 - 29196132
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaa 95  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||| |||||| ||| ||||||||| ||     ||||||||||    
T  29195988 atgggttttgtacgaaaacagtaacactgcgtcacttaacatgggatgcgtgagttaagttacgcagctttatttaaggtgcacaagggtaaatttggaa 29196087  T
Q  96 tggctgcagagcgcgagcaaaatgtgcagagtggagagcacgatt 140  Q
      ||||||  ||||||||||||||||||| |||||||||| ||||    
T  29196088 ctgctgcatggcgcgagcaaaatgtgcagggtggagagcaggatt 29196132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32910563 - 32910486
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaag 78  Q
    ||||||||||||||||||||||||| |||||| |||||||    | |  |||||||||||| ||||||||||||||||    
T  32910563 atgggttttgtacgaaaacagtaactctgcgtgacttaattcacgctacgtgagttaagttacgcagcgttacttaag 32910486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 50336353 - 50336501
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaa 95  Q
    |||||||||||||||||||||||||||||||||||||||  || | || ||||||||||||||||| ||||||||||||||||||     ||||||||||    
T  50336353 atgggttttgtacgaaaacagtaacactgcgtcacttaacctgcgctgcgtgagttaagttgcgcatcgttacttaaggtgcgcaagggtaaatttggaa 50336452  T
Q  96 tggctgcagagcgcgagcaaaatgtgcaga--gtggagagcacgattct 142  Q
     |||||||| ||||||||||||||||||||  |||||||||| ||||||    
T  50336453 cggctgcagggcgcgagcaaaatgtgcagagggtggagagcaagattct 50336501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 5534237 - 5534384
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaa 95  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |  | ||||||||||||||||| ||||||||||| |||| |     ||||||||||    
T  5534237 atgggttttgtacgaaaacagtaacactgcgtcacttaacatgcgccgcgtgagttaagttgcgcatcgttacttaagatgcgtaagggtaaatttggaa 5534336  T
Q  96 tggctgcagagcgcgagcaaaatgtgcagagtggagagcacgattctt 143  Q
     |||||||| | ||||| ||||||||||| |||||||||| |||||||    
T  5534337 cggctgcagggtgcgagtaaaatgtgcagggtggagagcaggattctt 5534384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 33990740 - 33990592
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaa 95  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||| ||| || |||||||||||||||||||     ||||||  ||    
T  33990740 atgggttttgtacgaaaacagtaacactgcgtcacttaacatgcgctgcgtgagttaaattgtgcggcgttacttaaggtgcgcaagggtaaatttaaaa 33990641  T
Q  96 tggctgcagagcgcgagcaaaatgtgcagagtggagagcacgattctta 144  Q
     ||||||||  || ||| ||||| ||||||||| |||||| ||||||||    
T  33990640 cggctgcaggacgtgagtaaaatttgcagagtgtagagcaggattctta 33990592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 12656493 - 12656346
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaa 95  Q
    |||| |||||||||||||||||||||||||||||||||| ||| | || |||||||||||| |||| | ||| |||||| || ||     |||||| |||    
T  12656493 atggattttgtacgaaaacagtaacactgcgtcacttaacatgcgctgcgtgagttaagttacgcatcattatttaaggcgcacaagggtaaatttagaa 12656394  T
Q  96 tggctgcagagcgcgagcaaaatgtgcagagtggagagcacgattctt 143  Q
     |||||||| | ||||||||||||||||| |||||||||| |||||||    
T  12656393 cggctgcagggtgcgagcaaaatgtgcagggtggagagcaggattctt 12656346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 43210151 - 43210290
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaa 95  Q
    |||||||||||||||||||||||| | ||||||||||||  ||   || |||||||||| || ||||||||||||||||||||||     ||||||| ||    
T  43210151 atgggttttgtacgaaaacagtaataatgcgtcacttaacttgcactgcgtgagttaaggtgtgcagcgttacttaaggtgcgcaagggtaaatttgaaa 43210250  T
Q  96 tggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
     |||||||| ||||||||||||| ||||| ||||||||||    
T  43210251 cggctgcagggcgcgagcaaaatatgcagtgtggagagca 43210290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1938558 - 1938473
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgcaa 86  Q
    ||||||||||| |||||||||||||| ||||||||||||  || | || |||||||||| || |||||||||||||||||||||||    
T  1938558 atgggttttgtgcgaaaacagtaacattgcgtcacttaacttgcgctgcgtgagttaaggtgtgcagcgttacttaaggtgcgcaa 1938473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 157007 - 157091
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca 85  Q
    |||| ||||||||||||||||||||||||||| ||||||     | || ||||||||||| | |||| |||||||||||||||||    
T  157007 atggattttgtacgaaaacagtaacactgcgtgacttaactcacgctgcgtgagttaagtagtgcagagttacttaaggtgcgca 157091  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 50008958 - 50008996
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaa 39  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  50008958 atgggttttgtacgaaaacagtaacacttcgtcacttaa 50008996  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 21713312 - 21713358
Alignment:
Q  89 tttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||    
T  21713312 tttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagca 21713358  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 31825876 - 31825922
Alignment:
Q  89 tttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||    
T  31825876 tttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagca 31825922  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 1939423 - 1939472
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    |||||||||| |||||||| ||||||||||||||||| | || |||||||    
T  1939423 aaatttggaacggctgcagggcgcgagcaaaatgtgctgggtagagagca 1939472  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 22923376 - 22923425
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    |||||||||| |||||||  ||||||||||||||||| | ||||||||||    
T  22923376 aaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtggagagca 22923425  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 22928029 - 22928078
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    |||||||||| |||||||  ||||||||||||||||| | ||||||||||    
T  22928029 aaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtggagagca 22928078  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 22984308 - 22984357
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    |||||||||| |||||||  ||||||||||||||||| | ||||||||||    
T  22984308 aaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtggagagca 22984357  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 22997896 - 22997945
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    |||||||||| |||||||  ||||||||||||||||| | ||||||||||    
T  22997896 aaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtggagagca 22997945  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 54185665 - 54185714
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    ||||||| || |||||||| ||||||||||||| ||||| ||||||||||    
T  54185665 aaatttgaaacggctgcagggcgcgagcaaaatatgcagggtggagagca 54185714  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 156090 - 156058
Alignment:
Q  88 atttggaatggctgcagagcgcgagcaaaatgt 120  Q
    ||||||||||||||||| |||||||||||||||    
T  156090 atttggaatggctgcagggcgcgagcaaaatgt 156058  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 41601098 - 41600951
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaa 95  Q
    |||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||| ||     ||||||||||    
T  41601098 atggattttgtacgaaaacagtaacactgcgtcacttaacatgcgctgtgtgagttaagttgcgcatcgttacttaaggtgcacaaggataaatttggaa 41600999  T
Q  96 tggctgcagagcgcgagcaaaatgtgcagagtggagagcacgattctt 143  Q
     ||||||||  |||||| ||||||||||| |||||||||| |||||||    
T  41600998 cggctgcaggacgcgagtaaaatgtgcagggtggagagcaggattctt 41600951  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 22661877 - 22661800
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaag 78  Q
    ||||||||||||||||||||||||| |||||| ||||||     | || ||||||||||| ||||| |||||||||||    
T  22661877 atgggttttgtacgaaaacagtaactctgcgtgacttaactcacgctgcgtgagttaagtagcgcaacgttacttaag 22661800  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 37227042 - 37226993
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    ||||||||||||||||||| ||||||||||||||||| | ||| ||||||    
T  37227042 aaatttggaatggctgcagggcgcgagcaaaatgtgctgggtgaagagca 37226993  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 43693712 - 43693758
Alignment:
Q  89 tttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||    
T  43693712 tttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagca 43693758  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 4412652 - 4412616
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgc 122  Q
    |||||||||| |||||||| |||||||||||||||||    
T  4412652 aaatttggaacggctgcagggcgcgagcaaaatgtgc 4412616  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 9829505 - 9829630
Alignment:
Q  1 atgggttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtgcgca-----aaatttggaa 95  Q
    ||||||||||||||||||||||||| |||| | ||||||    || || ||||||||||  ||||| |||||||||||||||| |     | |||||| |    
T  9829505 atgggttttgtacgaaaacagtaactctgcatgacttaactcatgctgcgtgagttaaggcgcgcaacgttacttaaggtgcgtaggggtatatttggca 9829604  T
Q  96 tggctgcagagcgcgagcaaaatgtg 121  Q
    ||||||||| ||||||||||||||||    
T  9829605 tggctgcagggcgcgagcaaaatgtg 9829630  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 5848148 - 5848197
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||| ||||    
T  5848148 aaatttggaatggctgctgggcgcgagcaaaatgtgcagggtggatagca 5848197  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 19380277 - 19380326
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    |||||||||| |||||||| ||||||||||||||||| | ||||||||||    
T  19380277 aaatttggaacggctgcagggcgcgagcaaaatgtgctgggtggagagca 19380326  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 43837559 - 43837513
Alignment:
Q  89 tttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||    
T  43837559 tttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagca 43837513  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 30933960 - 30934036
Alignment:
Q  5 gttttgtacgaaaacagtaacactgcgtcacttaatatgtgttgtgtgagttaagttgcgcagcgttacttaaggtg 81  Q
    |||||||||||||||||||||  |||||||||||| ||| | |  |||||||||||||| || ||||||||||||||    
T  30933960 gttttgtacgaaaacagtaacgttgcgtcacttaacatgcgctacgtgagttaagttgcacaacgttacttaaggtg 30934036  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 46637115 - 46637164
Alignment:
Q  86 aaatttggaatggctgcagagcgcgagcaaaatgtgcagagtggagagca 135  Q
    |||||||||| |||||||  |||||||||||||||||||  |||||||||    
T  46637115 aaatttggaacggctgcatggcgcgagcaaaatgtgcaggatggagagca 46637164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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