View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7596_low_4 (Length: 618)
Name: NF7596_low_4
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7596_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 33965907 - 33965626
Alignment:
| Q |
19 |
aacaagaaaaaaggcggtcacaaaagcggtaaagccttaactcaggctgagggccaccgcatccgaatttaacataggctcgaatcggccaccaggaatt |
118 |
Q |
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| T |
33965907 |
aacaagaaaaaaggcggtcacaaaagcggtaaagccttaactcaggctgagggccaccgcctccgaatttaacataggctcgaatcggccac-aggaatt |
33965809 |
T |
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| Q |
119 |
gataaccaaacaaatcccctccctgaatacttccattgactttccttggccttgcaccaccgctctagaaccaaacaaagcattcatagccaaactcatc |
218 |
Q |
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| T |
33965808 |
gataaccaaacaaatcccctccctgaatacttccattgactttccttggccttgcaccaccgctctagaaccaaacaaagcattcatagccaaactcatc |
33965709 |
T |
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| Q |
219 |
cctctgtagtatactttcattgaatcctctccttgaccttgcacatctctagaactagcttccatcttcgaattaaataaaat |
301 |
Q |
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| T |
33965708 |
cctctgtagtatactttcattgaatcctctccttgaccttgcacatctctagaactagcttccatcttcgaataaaataaaat |
33965626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 345 - 606
Target Start/End: Complemental strand, 33965585 - 33965312
Alignment:
| Q |
345 |
ctatgcatcgatattaaaacaaacttcaacaattgaagcaaactacaaagaacgagaaaaacattaccttaccttcccaaaagaacaaacgatttgcaaa |
444 |
Q |
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| T |
33965585 |
ctatgcatcgatattaaaacaaacttcaacaattgaagcaaactacaaagaacgagaaaaacattaccttaccttcccaaaagaacaaacgatttgcaaa |
33965486 |
T |
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| Q |
445 |
cggaatgattcagataggattcgattggaacgagaaccagaagcaattgatcctttagggtttccagattctggttttgcgtgcgatttggctaac---- |
540 |
Q |
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| T |
33965485 |
cggaatgattcagataggattcgattggaaggagaaccagaagcaattgatcctttagggtttccagattctggttttgcgagtgatttggctaacgagg |
33965386 |
T |
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| Q |
541 |
--------gatggaagggaacctcacttttagaaaatattagagaagaaataaaactttaggtgcttcatctca |
606 |
Q |
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| T |
33965385 |
gaaggaatgagggaagggaacctcacttttagaaaatattagagaagaaataaaactttaggtgcttcatctca |
33965312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 33970161 - 33970096
Alignment:
| Q |
229 |
atactttcattgaatcctctccttgaccttgcacatctctagaactagcttccatcttcgaattaa |
294 |
Q |
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| T |
33970161 |
atactttcattgaatcctcttctgaaccttgcacatcattagaacaaccttccatctgagaattaa |
33970096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 44945398 - 44945350
Alignment:
| Q |
115 |
aattgataaccaaacaaatcccctccctgaatacttccattgactttcc |
163 |
Q |
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| T |
44945398 |
aatttatagccaaacaaatcccttctctgaatacttccattggctttcc |
44945350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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