View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7596_low_5 (Length: 596)
Name: NF7596_low_5
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7596_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 579
Target Start/End: Complemental strand, 42467606 - 42467045
Alignment:
| Q |
17 |
ataatggagttcaagaactctctgcaaatgtaaatgaagcaaagaggattctaaataatgatacaatcacatctcaccatgtacattttatggagttgtt |
116 |
Q |
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| T |
42467606 |
ataatggagttcaagaactctctgcaaatgtaaatgaagcaaagaggattctaaataatgatacaatcacatctcaccatgtacattttatggagttgtt |
42467507 |
T |
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| Q |
117 |
ttaagaattaattcagcgaattaagtgatgttacgatgtgatttgattagagatatatgtaatgaatttgataatatcattgcatagtgattaatttaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
42467506 |
ttaagaattaattcagcgaattaagtgatgttacgatgtgatttgattagagatatatgtaaagaatttgataatatcattgcatagtgattaatt-aat |
42467408 |
T |
|
| Q |
217 |
ctctcgattacattgagtttacatttcactttcagatttgtaaaactaacaaaaagtctctttgattgtggaaaattaatcacaacagataaaaatatat |
316 |
Q |
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| T |
42467407 |
ctctcgattacattgagtttacatttcactttcagatttgtaaaactaacaaaaagtctctttgattgtggaaaattaatcacaacagataaaaatatat |
42467308 |
T |
|
| Q |
317 |
aaccgtggtgtatttaaacaagtaaattaaaaggatgagcactgatggcaacatacttcaatgaaaattgacatgtgtggaataggttattccagcaccc |
416 |
Q |
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| T |
42467307 |
aaccgtggtgtatttaaacaagtaaattaaaaggatgagcactgatggcaacatacttcaatgaaaattgacatgtgtggaataggttagtccagcaccc |
42467208 |
T |
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| Q |
417 |
cagttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgctt |
516 |
Q |
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| T |
42467207 |
cagttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgctt |
42467108 |
T |
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| Q |
517 |
ggtaagaagcaccccaattgtggctcatgctaatccatcctgttctacttcctttaacccaca |
579 |
Q |
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| T |
42467107 |
ggtaagaagcaccccaattgtggctcatgctaatccatcctgttctacttcctttaacccaca |
42467045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 420 - 571
Target Start/End: Original strand, 3183511 - 3183662
Alignment:
| Q |
420 |
ttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgcttggt |
519 |
Q |
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|||||||||||||||||||| || || ||||| || || || ||||| ||||||| | |||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
3183511 |
ttggaaggagcaacattccatgcaataatagtctccttagtggtgtatgaagtaagcctgaaagaaagagcttgaccacctagtgttgcaaatgcttggt |
3183610 |
T |
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| Q |
520 |
aagaagcaccccaattgtggctcatgctaatccatcctgttctacttccttt |
571 |
Q |
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| T |
3183611 |
aggaagcaccccagttatggctcatcttaatccatcctgttctgcttccttt |
3183662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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