View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7596_low_7 (Length: 498)
Name: NF7596_low_7
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7596_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 3482442 - 3482036
Alignment:
| Q |
1 |
ggcactcatttacccacgtgaattataaactataaatatcgtagcacacgtctaggcaagttcttgtaaaatatgaatcgattccttaccaattagatca |
100 |
Q |
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| T |
3482442 |
ggcactcatttacccacatgaattataaactataaatattgtagcacac--------aagttcttgtaaaatatgagtcgattccttatcaattagatca |
3482351 |
T |
|
| Q |
101 |
aactacacaggctacattttatttttggttaaatgatacttatttcatttcattaataataattattttgttgacaaagatttcaatccttgacgagaat |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3482350 |
aactacaccggctacattttatttttggttaaatgatacttatttcatttcattaataataattattttgttgacaaagatttcaatccttgacgagaat |
3482251 |
T |
|
| Q |
201 |
acagcagaatttagcatttggtggcagctgaagaaggtactatgttatatagtttcaatttctttgtatgttcactttggttggtatgcaatttctgcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3482250 |
acagcagaatttagcatttggtggcagctgaagaaggtactatgttatatagtttcaatttctttgtatgttcactttggttggtatgcaattcctgcta |
3482151 |
T |
|
| Q |
301 |
ccataaatagcttcaaaagtggagtttccattaataaacaactagtatacatataataatcttaatgcacatgcttgcttacatttttgtcatatttgac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3482150 |
ccataaatagcttcaaaagtggagtttccattaataaacaactagtatacatataataatcttaatgcacatgcttgcttacatttttgtcatatttgac |
3482051 |
T |
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| Q |
401 |
ctcttaatgcacatg |
415 |
Q |
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||||||||||||||| |
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| T |
3482050 |
ctcttaatgcacatg |
3482036 |
T |
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