View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7596_low_9 (Length: 441)

Name: NF7596_low_9
Description: NF7596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7596_low_9
NF7596_low_9
[»] chr4 (19 HSPs)
chr4 (18-429)||(7297609-7298020)
chr4 (28-98)||(4691928-4691998)
chr4 (43-97)||(50746070-50746124)
chr4 (47-103)||(7367969-7368025)
chr4 (47-99)||(22796754-22796806)
chr4 (68-103)||(26590644-26590679)
chr4 (68-103)||(37636101-37636136)
chr4 (33-100)||(52333683-52333750)
chr4 (49-103)||(28615435-28615489)
chr4 (65-99)||(31851566-31851600)
chr4 (66-103)||(679409-679446)
chr4 (28-101)||(9720571-9720644)
chr4 (67-103)||(2244170-2244206)
chr4 (68-100)||(22662169-22662201)
chr4 (68-100)||(22666648-22666680)
chr4 (67-99)||(23339219-23339251)
chr4 (67-103)||(27043745-27043781)
chr4 (48-100)||(32071963-32072015)
chr4 (67-99)||(52428783-52428815)
[»] chr8 (13 HSPs)
chr8 (21-100)||(16162833-16162912)
chr8 (48-100)||(7008698-7008750)
chr8 (69-103)||(40357049-40357083)
chr8 (47-100)||(44236741-44236794)
chr8 (68-103)||(10727464-10727499)
chr8 (42-93)||(26499810-26499861)
chr8 (30-103)||(1889050-1889123)
chr8 (30-99)||(2487927-2487996)
chr8 (43-100)||(9700096-9700153)
chr8 (65-102)||(40728327-40728364)
chr8 (47-103)||(1664468-1664524)
chr8 (47-99)||(14926901-14926953)
chr8 (68-100)||(31891931-31891963)
[»] chr3 (8 HSPs)
chr3 (21-100)||(44014716-44014795)
chr3 (49-103)||(25459545-25459599)
chr3 (49-103)||(30657387-30657441)
chr3 (30-99)||(20210847-20210916)
chr3 (67-102)||(25447161-25447196)
chr3 (43-99)||(13709755-13709811)
chr3 (67-103)||(36507007-36507043)
chr3 (75-103)||(50952491-50952519)
[»] chr2 (6 HSPs)
chr2 (30-99)||(11513978-11514047)
chr2 (47-100)||(15370241-15370294)
chr2 (21-103)||(8017507-8017589)
chr2 (43-100)||(41170705-41170762)
chr2 (52-100)||(1830143-1830191)
chr2 (47-99)||(22878197-22878249)
[»] chr6 (10 HSPs)
chr6 (43-103)||(10016718-10016778)
chr6 (47-94)||(3738200-3738247)
chr6 (49-103)||(7351586-7351640)
chr6 (21-99)||(33089579-33089657)
chr6 (70-99)||(1231218-1231247)
chr6 (70-99)||(9911802-9911831)
chr6 (62-103)||(31623664-31623705)
chr6 (65-101)||(9202902-9202938)
chr6 (68-100)||(30536883-30536915)
chr6 (67-99)||(33027711-33027743)
[»] chr1 (12 HSPs)
chr1 (47-103)||(25719770-25719826)
chr1 (53-99)||(172492-172538)
chr1 (47-99)||(4868498-4868550)
chr1 (43-98)||(6659775-6659830)
chr1 (68-102)||(30013995-30014029)
chr1 (47-100)||(15558310-15558363)
chr1 (30-99)||(36070263-36070332)
chr1 (44-100)||(2463338-2463394)
chr1 (48-96)||(2522696-2522744)
chr1 (67-99)||(26679473-26679505)
chr1 (43-99)||(28467528-28467584)
chr1 (43-103)||(29793852-29793912)
[»] chr7 (9 HSPs)
chr7 (18-100)||(3610658-3610740)
chr7 (30-103)||(529444-529517)
chr7 (67-103)||(41040284-41040320)
chr7 (49-100)||(24363518-24363569)
chr7 (50-99)||(1418521-1418570)
chr7 (28-97)||(39542221-39542290)
chr7 (47-99)||(5499111-5499162)
chr7 (71-103)||(28691751-28691783)
chr7 (70-98)||(34464141-34464169)
[»] chr5 (11 HSPs)
chr5 (30-103)||(11684482-11684555)
chr5 (30-99)||(11104987-11105056)
chr5 (47-100)||(29336729-29336782)
chr5 (47-100)||(40335791-40335844)
chr5 (49-97)||(10771809-10771857)
chr5 (47-103)||(12074361-12074417)
chr5 (67-103)||(14331485-14331521)
chr5 (70-98)||(20458293-20458321)
chr5 (68-100)||(32010065-32010097)
chr5 (68-100)||(34417844-34417876)
chr5 (67-103)||(40111387-40111423)
[»] scaffold0388 (1 HSPs)
scaffold0388 (70-99)||(8748-8777)
[»] scaffold0199 (1 HSPs)
scaffold0199 (47-103)||(6909-6965)


Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 7297609 - 7298020
Alignment:
Q  18 attagctgtatccataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagaccgatccttagtagca 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7297609 attagctgtatccataagttttctaaaatagtctaacaagtgcgtaggcctgtagataaactcaaataaatcaatccaaacagaccgacccttagtagca 7297708  T
Q  118 tttggtagaggatagaaccgggcaaggaaacaaatcataagggttttattcaagaacaactctatagatggagaacctctggaagatgatgaagcttttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7297709 tttggtagaggatagaaccgggcaaggaaacaaatcataagggttttattcaagagcaactctatagatggagaacctctggaagatgatgaagcttttg 7297808  T
Q  218 gatgagaaagagaaggaggttggtggcggaagaccagaaacgatgacatcaatggaagagagtggtttacctgaatgctttcaatgtttaagagtctatt 317  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7297809 gatgagaaagagaaggaggttggtggtggaagaccagaaacgatgacatcaatggaagagagtggtttacctgaatgctttcaatgtttaagagtctatt 7297908  T
Q  318 tgtttgagactggaattggaatgaatgaaaaacgcaaaatttggctttttgaggaattctttttaaaagctcatatgttgttgttactttggttggaact 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7297909 tgtttgagactggaattggaatgaatgaaaaacgcaaaatttggctttttgaggaattctttttaaaagctcatatgttgttgttactttggttggaact 7298008  T
Q  418 gattttgatatt 429  Q
    ||||||||||||    
T  7298009 gattttgatatt 7298020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 4691928 - 4691998
Alignment:
Q  28 tccataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaac 98  Q
    |||||||||||||| |||||||||||||||||  |  | |||||||||| |||||||||||||| ||||||    
T  4691928 tccataagttttctcaaatagtctcacaagtgattgtgacagtagataagctcaaataaatcaaaccaaac 4691998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 50746070 - 50746124
Alignment:
Q  43 aaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaa 97  Q
    |||||||||||||||||| || || ||||||||||||||||||| ||||| ||||    
T  50746070 aaatagtctcacaagtgcttatgcaagtagataaactcaaataagtcaatacaaa 50746124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 7368025 - 7367969
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    ||||||||||| |  || ||| |||||||||||||||||| ||||||||||||||||    
T  7368025 agtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaacagacc 7367969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 22796754 - 22796806
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    ||||||| || ||| || || ||||||||||||||||||||||||||||||||    
T  22796754 agtctcataaatgcttatgctagtagataaactcaaataaatcaatccaaaca 22796806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 26590644 - 26590679
Alignment:
Q  68 agtagataaactcaaataaatcaatccaaacagacc 103  Q
    ||||||||||||||||||| ||||||||||||||||    
T  26590644 agtagataaactcaaataattcaatccaaacagacc 26590679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 37636136 - 37636101
Alignment:
Q  68 agtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||||||||||||||||||| |||||    
T  37636136 agtagataaactcaaataaatcaatccaaatagacc 37636101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 52333683 - 52333750
Alignment:
Q  33 aagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||| | |||||||||||||||||| |||| ||||| |||| |||||||||  ||||| ||||||    
T  52333683 aagttttttgaaatagtctcacaagtgcttaggtcagtaaataagctcaaataagccaatcgaaacag 52333750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 28615435 - 28615489
Alignment:
Q  49 tctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||  || || |||||||||||| |||||| ||||||||||||||||    
T  28615435 tctcacaagtgtttatgctagtagataaacttaaataagtcaatccaaacagacc 28615489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 31851566 - 31851600
Alignment:
Q  65 gccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||||||||||| ||||||||||||||||||    
T  31851566 gccagtagataaactcgaataaatcaatccaaaca 31851600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 679409 - 679446
Alignment:
Q  66 ccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  679409 ccagtagataaactcaaataagtcaattcaaacagacc 679446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 9720644 - 9720571
Alignment:
Q  28 tccataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacaga 101  Q
    |||||||||||||| ||| |||||  | ||||| || |  ||||||||||||||||||| ||||||| ||||||    
T  9720644 tccataagttttctcaaacagtctatctagtgcttatgttagtagataaactcaaataagtcaatcccaacaga 9720571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 2244170 - 2244206
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaacagacc 103  Q
    ||||||||||||||  |||||||||||||||||||||    
T  2244170 cagtagataaactcggataaatcaatccaaacagacc 2244206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 22662201 - 22662169
Alignment:
Q  68 agtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||||||||||||||| |||||||||||||    
T  22662201 agtagataaactcaaataagtcaatccaaacag 22662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 22666680 - 22666648
Alignment:
Q  68 agtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||||||||||||||| |||||||||||||    
T  22666680 agtagataaactcaaataagtcaatccaaacag 22666648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 23339251 - 23339219
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||||||||||||||||| ||||||||||    
T  23339251 cagtagataaactcaaataaattaatccaaaca 23339219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 27043781 - 27043745
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  27043781 cagtagataagctcaaataagtcaatccaaacagacc 27043745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 32071963 - 32072015
Alignment:
Q  48 gtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||||||||| || | || ||||||||||||||||| ||| |||||||||    
T  32071963 gtctcacaagtgcttatgtcaatagataaactcaaataagtcagtccaaacag 32072015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 52428783 - 52428815
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||||||||||||||| ||||||||||||    
T  52428783 cagtagataaactcaaataagtcaatccaaaca 52428815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 16162833 - 16162912
Alignment:
Q  21 agctgtatccataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    |||||| | |||||||||||| ||| |||||||||||||  || || |||||||||||||||||||  ||||||||||||    
T  16162833 agctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacag 16162912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 7008698 - 7008750
Alignment:
Q  48 gtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||||||||| || |||||||||||||||||||||| ||||| |||||||    
T  7008698 gtctcacaagtgcttatgccagtagataaactcaaataagtcaattcaaacag 7008750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 40357049 - 40357083
Alignment:
Q  69 gtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||||||||||||||||||||||||    
T  40357049 gtagataaactcaaataaatcaatccaaacagacc 40357083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 44236794 - 44236741
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    |||||||||||||| || ||||||||||||||||||||||   |||||||||||    
T  44236794 agtctcacaagtgcttatgccagtagataaactcaaataaggtaatccaaacag 44236741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 10727464 - 10727499
Alignment:
Q  68 agtagataaactcaaataaatcaatccaaacagacc 103  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10727464 agtagataaactcaaataagtcaatccaaacagacc 10727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 26499810 - 26499861
Alignment:
Q  42 aaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatc 93  Q
    ||||||||||||||||||| || | ||||||||||| |||||||| ||||||    
T  26499810 aaaatagtctcacaagtgcttatgtcagtagataaattcaaataattcaatc 26499861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 1889123 - 1889050
Alignment:
Q  30 cataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||| ||||  ||| ||||||| |||||  || |||||||||||||||||||||| || ||| |||||||||    
T  1889123 cataagctttcccaaacagtctcaaaagtgtttatgccagtagataaactcaaataagtccatctaaacagacc 1889050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 2487996 - 2487927
Alignment:
Q  30 cataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||| ||  ||| |||||||||||||| || | |||||||| |||||||||||  |||||||||||    
T  2487996 cataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaaca 2487927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 9700096 - 9700153
Alignment:
Q  43 aaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    |||||||||||||||||  || || ||||||||| ||||||||| | |||||||||||    
T  9700096 aaatagtctcacaagtgtttatgctagtagataagctcaaataagttaatccaaacag 9700153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 40728364 - 40728327
Alignment:
Q  65 gccagtagataaactcaaataaatcaatccaaacagac 102  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  40728364 gccagtagatagactcaaataagtcaatccaaacagac 40728327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 1664468 - 1664524
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||  || || ||||||||||||||||||| || ||| |||||||||    
T  1664468 agtctcacaagtgtttatgctagtagataaactcaaataagtccatctaaacagacc 1664524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 14926953 - 14926901
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||||||||| || ||||||| ||||  |||||||| ||||||||||||    
T  14926953 agtctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaaca 14926901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 31891931 - 31891963
Alignment:
Q  68 agtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||||||||||||||||| |||||||||||    
T  31891931 agtagataaactcaaataaattaatccaaacag 31891963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 44014795 - 44014716
Alignment:
Q  21 agctgtatccataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    |||||| | |||||||||||| ||| |||||||||||||  || || |||||||||||||||||||  ||||||||||||    
T  44014795 agctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacag 44014716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 25459599 - 25459545
Alignment:
Q  49 tctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||| || || ||| ||||| ||||||||||||||||||||||||||    
T  25459599 tctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaacagacc 25459545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 30657387 - 30657441
Alignment:
Q  49 tctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    ||||| |||||| || | |||||||||||||||||||||||||| ||||||||||    
T  30657387 tctcaaaagtgcttatgtcagtagataaactcaaataaatcaattcaaacagacc 30657441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 20210916 - 20210847
Alignment:
Q  30 cataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||| | ||| ||| |||||||||||||  || | |||||||||| ||||||||||||||||||||||    
T  20210916 cataagatctctcaaacagtctcacaagtggttatgtcagtagataacctcaaataaatcaatccaaaca 20210847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 25447196 - 25447161
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaacagac 102  Q
    |||||||||||||||||||| |||||||||||||||    
T  25447196 cagtagataaactcaaataagtcaatccaaacagac 25447161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 13709811 - 13709755
Alignment:
Q  43 aaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||||||||||||| ||  |||||||||||| |||||||| || || ||||||    
T  13709811 aaatagtctcacaagtgcttatcccagtagataaattcaaataagtcgatgcaaaca 13709755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 36507043 - 36507007
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaacagacc 103  Q
    ||||||||||||||||||||  |||||||||||||||    
T  36507043 cagtagataaactcaaataagccaatccaaacagacc 36507007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 50952491 - 50952519
Alignment:
Q  75 aaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||||||||||||||||||    
T  50952491 aaactcaaataaatcaatccaaacagacc 50952519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 11513978 - 11514047
Alignment:
Q  30 cataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||| | ||||||| |||||||||||||| || || ||||||||| |||||||||| |||||||||||    
T  11513978 cataagctctctaaaacagtctcacaagtgcttatgctagtagataatctcaaataaaccaatccaaaca 11514047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 15370294 - 15370241
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    |||||||||| ||| || |||||||||||| ||||||||| |||||||||||||    
T  15370294 agtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacag 15370241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 8017507 - 8017589
Alignment:
Q  21 agctgtatccataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||| | |||||||| ||  ||||| || ||||||||| || | || ||||||| ||||||||| ||||||||||||||||    
T  8017507 agctgttttcataagttctcccaaataatcgcacaagtgcttatgtcaatagataacctcaaataagtcaatccaaacagacc 8017589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 41170705 - 41170762
Alignment:
Q  43 aaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    |||||||||||||||||  || |  |||||||||||||||||||  ||||||||||||    
T  41170705 aaatagtctcacaagtgtttatgttagtagataaactcaaataagccaatccaaacag 41170762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 1830143 - 1830191
Alignment:
Q  52 cacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||||| || | ||||| |||||||||||||| |||||||||||||    
T  1830143 cacaagtgcttatgtcagtaaataaactcaaataagtcaatccaaacag 1830191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 22878197 - 22878249
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||||||||| || | |||| ||||| ||||||||| ||||||||||||    
T  22878197 agtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaaca 22878249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 10016718 - 10016778
Alignment:
Q  43 aaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||||||  || ||| |||||||| |||||||||| |||||||||||||||    
T  10016718 aaatagtctcacaagtgtttatgcctgtagataagctcaaataaaccaatccaaacagacc 10016778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 3738200 - 3738247
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatcc 94  Q
    |||||||||||||| || || ||||||||||||||||||| |||||||    
T  3738200 agtctcacaagtgcttatgctagtagataaactcaaataagtcaatcc 3738247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 7351640 - 7351586
Alignment:
Q  49 tctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||| || | |||||||||||||||||||| |||||  |||||||||    
T  7351640 tctcacaagtgcttatgtcagtagataaactcaaataagtcaatttaaacagacc 7351586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 33089579 - 33089657
Alignment:
Q  21 agctgtatccataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||| | |||||||| ||| |||||||||||||| | | || | |||||||||| ||||||||| |||| |||||||    
T  33089579 agctgttttcataagttctctgaaatagtctcacaaatacatatgtcagtagataagctcaaataagtcaacccaaaca 33089657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 1231247 - 1231218
Alignment:
Q  70 tagataaactcaaataaatcaatccaaaca 99  Q
    ||||||||||||||||||||||||||||||    
T  1231247 tagataaactcaaataaatcaatccaaaca 1231218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 9911831 - 9911802
Alignment:
Q  70 tagataaactcaaataaatcaatccaaaca 99  Q
    ||||||||||||||||||||||||||||||    
T  9911831 tagataaactcaaataaatcaatccaaaca 9911802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 31623664 - 31623705
Alignment:
Q  62 taggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||||| |||||||| ||||| ||||||||||    
T  31623664 taggccagtagataaattcaaataagtcaattcaaacagacc 31623705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 9202938 - 9202902
Alignment:
Q  65 gccagtagataaactcaaataaatcaatccaaacaga 101  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  9202938 gccagtagataagctcaaataagtcaatccaaacaga 9202902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 30536915 - 30536883
Alignment:
Q  68 agtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||||||||||||||| |||||||||||||    
T  30536915 agtagataaactcaaataagtcaatccaaacag 30536883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 33027711 - 33027743
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||||| ||||||||||||||||||||||    
T  33027711 cagtagataagctcaaataaatcaatccaaaca 33027743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 25719770 - 25719826
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    ||||||| || ||| || ||||||| |||||||||||||||||||||||||||||||    
T  25719770 agtctcataaatgcttaagccagtaaataaactcaaataaatcaatccaaacagacc 25719826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 172538 - 172492
Alignment:
Q  53 acaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  172538 acaagtgcttaggcaagtagataaactcaaataagtcaatccaaaca 172492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 4868498 - 4868550
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||||||||| || | || |||||||| |||||||||||||||||||||    
T  4868498 agtctcacaagtgcctatgtcaatagataaattcaaataaatcaatccaaaca 4868550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 6659775 - 6659830
Alignment:
Q  43 aaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaac 98  Q
    |||||||||||||||||| || || ||||||||| || |||||| |||||||||||    
T  6659775 aaatagtctcacaagtgcttatgctagtagataagctaaaataagtcaatccaaac 6659830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 30014029 - 30013995
Alignment:
Q  68 agtagataaactcaaataaatcaatccaaacagac 102  Q
    ||||||||||||||||||| |||||||||||||||    
T  30014029 agtagataaactcaaataagtcaatccaaacagac 30013995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 15558310 - 15558363
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    |||||||||||||  || |||||| ||||| ||||||||| |||||||||||||    
T  15558310 agtctcacaagtgtttaagccagtcgataagctcaaataactcaatccaaacag 15558363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 36070263 - 36070332
Alignment:
Q  30 cataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||| ||  ||| |||||||||||||| || ||||| ||||||  ||||||||| |||||||||||    
T  36070263 cataagttctcctaaacagtctcacaagtgcttatgccagaagataatatcaaataaaccaatccaaaca 36070332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 2463338 - 2463394
Alignment:
Q  44 aatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    |||||||||| |||||| || | ||||| | || |||||||||||||||||||||||    
T  2463338 aatagtctcagaagtgcttatgtcagtataaaacctcaaataaatcaatccaaacag 2463394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 2522696 - 2522744
Alignment:
Q  48 gtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaa 96  Q
    |||| |||||||  || |||||||||||||||||||||| |||||||||    
T  2522696 gtcttacaagtgtttatgccagtagataaactcaaataagtcaatccaa 2522744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 26679473 - 26679505
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||||| ||||||||||||||||||||||    
T  26679473 cagtagataagctcaaataaatcaatccaaaca 26679505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 28467528 - 28467584
Alignment:
Q  43 aaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    ||||||||||| ||||||  | || |||| |||||||||||||| ||||||||||||    
T  28467528 aaatagtctcataagtgctaatgctagtaaataaactcaaataagtcaatccaaaca 28467584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 29793852 - 29793912
Alignment:
Q  43 aaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||||||| || ||  ||| ||||| |||||||| ||||| ||||||||||    
T  29793852 aaatagtctcacaagtgcttatgctggtaaataaattcaaataagtcaattcaaacagacc 29793912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 3610740 - 3610658
Alignment:
Q  18 attagctgtatccataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||||| |||||||| ||||  ||| ||| |||||||||  ||||||||||||||| |||||||||  |||| |||||||    
T  3610740 attagctgtttccataaggtttcccaaaaagtatcacaagtggttaggccagtagataagctcaaataagccaattcaaacag 3610658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 529444 - 529517
Alignment:
Q  30 cataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||| ||  |||||| ||||||||||  || |||||||||||| ||||||||| ||||||||| ||||||    
T  529444 cataagttctcccaaatagcctcacaagtgtttatgccagtagataagctcaaataagtcaatccaatcagacc 529517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 41040284 - 41040320
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||||||||||||||| ||||||||||    
T  41040284 cagtagataaactcaaataaatcaattcaaacagacc 41040320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 24363569 - 24363518
Alignment:
Q  49 tctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    ||||| |||||| || || |||||||||||||||||||| ||||||||||||    
T  24363569 tctcataagtgcttatgctagtagataaactcaaataaaacaatccaaacag 24363518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 1418521 - 1418570
Alignment:
Q  50 ctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||| |||||| || |||||||||||| ||||||||| ||||||||||||    
T  1418521 ctcataagtgcttatgccagtagataagctcaaataagtcaatccaaaca 1418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 39542290 - 39542221
Alignment:
Q  28 tccataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaa 97  Q
    |||||||| | |||||||  ||||| ||||||| || || ||||||||||||||||||| |||| |||||    
T  39542290 tccataagctctctaaaactgtctcgcaagtgcttatgctagtagataaactcaaataagtcaacccaaa 39542221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 5499162 - 5499111
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    ||||||| ||| || || |||||||||||| ||||||||||||||||||||||    
T  5499162 agtctcagaagggcttatgccagtagataa-ctcaaataaatcaatccaaaca 5499111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 28691783 - 28691751
Alignment:
Q  71 agataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||||| ||||||||||||||||    
T  28691783 agataaactcaaataagtcaatccaaacagacc 28691751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 34464169 - 34464141
Alignment:
Q  70 tagataaactcaaataaatcaatccaaac 98  Q
    |||||||||||||||||||||||||||||    
T  34464169 tagataaactcaaataaatcaatccaaac 34464141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 11684482 - 11684555
Alignment:
Q  30 cataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||| ||||| ||| ||||||||||||||  | | |||||||||| |||||||||| ||||| |||||||||    
T  11684482 cataagctttcttaaacagtctcacaagtgctcatgacagtagataagctcaaataaaccaatctaaacagacc 11684555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 11104987 - 11105056
Alignment:
Q  30 cataagttttctaaaatagtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaaca 99  Q
    |||||||| ||  ||||||| |||||||||| || ||  || ||||| ||||||||||||||||||||||    
T  11104987 cataagttctcccaaatagtatcacaagtgcttatgctggttgataagctcaaataaatcaatccaaaca 11105056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 29336729 - 29336782
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    |||||||||||||| |  |||| ||||||||||||||| | |||||||||||||    
T  29336729 agtctcacaagtgcttttgccaatagataaactcaaatgattcaatccaaacag 29336782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 40335844 - 40335791
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacag 100  Q
    |||||||||||||  |  || ||||||||||||||||||| |||||||||||||    
T  40335844 agtctcacaagtgtttgtgcgagtagataaactcaaataagtcaatccaaacag 40335791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 10771857 - 10771809
Alignment:
Q  49 tctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaa 97  Q
    |||||||||||| || |||||||||||| |||||||||  |||||||||    
T  10771857 tctcacaagtgcttatgccagtagataagctcaaataagccaatccaaa 10771809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 12074417 - 12074361
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||| | |  |||| || |||||||||||||| ||||||||||||||||    
T  12074417 agtctcacaagtacttgagccattaaataaactcaaataagtcaatccaaacagacc 12074361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 14331485 - 14331521
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  14331485 cagtagataagctcaaataagtcaatccaaacagacc 14331521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 20458293 - 20458321
Alignment:
Q  70 tagataaactcaaataaatcaatccaaac 98  Q
    |||||||||||||||||||||||||||||    
T  20458293 tagataaactcaaataaatcaatccaaac 20458321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 32010065 - 32010097
Alignment:
Q  68 agtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||||||||||||||| |||||||||||||    
T  32010065 agtagataaactcaaataagtcaatccaaacag 32010097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 34417876 - 34417844
Alignment:
Q  68 agtagataaactcaaataaatcaatccaaacag 100  Q
    ||||||||||||||||||||| |||||||||||    
T  34417876 agtagataaactcaaataaattaatccaaacag 34417844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 40111387 - 40111423
Alignment:
Q  67 cagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||||||||| |||||| |||||||||    
T  40111387 cagtagataaactcaaataagtcaatcgaaacagacc 40111423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 8777 - 8748
Alignment:
Q  70 tagataaactcaaataaatcaatccaaaca 99  Q
    ||||||||||||||||||||||||||||||    
T  8777 tagataaactcaaataaatcaatccaaaca 8748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 6909 - 6965
Alignment:
Q  47 agtctcacaagtgcgtaggccagtagataaactcaaataaatcaatccaaacagacc 103  Q
    |||||||||||||  || || ||||||||||||||||||| || ||| |||||||||    
T  6909 agtctcacaagtgtttatgctagtagataaactcaaataagtccatctaaacagacc 6965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University