View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7597_high_5 (Length: 393)
Name: NF7597_high_5
Description: NF7597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7597_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 31916169 - 31915814
Alignment:
| Q |
1 |
tctacgatggtttccacaagaaccttattggaggattagcactcaactctatattttgcacagatattatgttacacctttcgcaccaaaatatgatcca |
100 |
Q |
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| T |
31916169 |
tctacgatggtttccacaagaaccttattggaggattagcactcaactcgatattttgcacagatattatgttacacctttcgcaccaaaatatgatcca |
31916070 |
T |
|
| Q |
101 |
gcaccgtatttacaaggcgaacactctattaaccacattttagtccggttaagtgtccaaagaatttatgagtatttatcatcaa--gttaaaaaatgtt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
31916069 |
gcaccgtatttacaaggcgaacactctattaaccacattttagtccggttaagtgtccaaattttttatgagtatttatcttcaaaggttaaaaaatgtt |
31915970 |
T |
|
| Q |
199 |
caa-tttagttactttctaaaacaacatatcnnnnnnnaacaatattgttttgtacgtgatatttgataaatatcataaac-----ttcttttttcgtta |
292 |
Q |
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||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31915969 |
caattttagttactttctaaaacaacatatctttttttaataatattgttttgtacgtgatatttgataaatatcataaactttctttcttttttcgtta |
31915870 |
T |
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| Q |
293 |
actatattttaatgtttgttaagaagagacaatactggcgcaagtacatctaatat |
348 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31915869 |
actatattttaatgtttgttaagaagagacaatattggcgcaagtacatctaatat |
31915814 |
T |
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