View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7597_high_6 (Length: 389)
Name: NF7597_high_6
Description: NF7597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7597_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 6845252 - 6845529
Alignment:
| Q |
13 |
aatattaagagaattcacatgctaagtgtactttctttgatattttgggtagacataatattttcaattttaaattactatgttgaatgtatcgaaatag |
112 |
Q |
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| T |
6845252 |
aatattaagagaactcacatgctaagtttactttctttgatattttgggtagacataatattttgaattttaaactactattgtgaatgtatcgaaatag |
6845351 |
T |
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| Q |
113 |
aaaacacattcttaaatatcttttttattagtcattttggcctggcatcaaaaatg-------tttttagataatcaatttagttttgaatgtgttttat |
205 |
Q |
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| T |
6845352 |
caaacacattcttaaatatcttttttattagtcattttggcttggcttcaaaaatgtttttactttttagataatcaatttagttttgaatgtgttttta |
6845451 |
T |
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| Q |
206 |
gttgatcaatttaatacataaattactaataaaatagacattatatatgtggactttaatgcaattttgatctacatttt |
285 |
Q |
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| T |
6845452 |
gttgatcaatttaatacataaattactaataaaataggcattaaaaatgtggac--tattacaagtttgatctacatttt |
6845529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 18234987 - 18235094
Alignment:
| Q |
33 |
gctaagtgtactttctttgatattttgggtagacataatattttcaattttaaattactatgttgaatgtatcgaaatagaaaacacattcttaaatatc |
132 |
Q |
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| T |
18234987 |
gctaagtgtactttctttgatattttgggtagacataatattttgaattttgaactattattttgaatgcaacaaaataacaaacacatccataaatata |
18235086 |
T |
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| Q |
133 |
ttttttat |
140 |
Q |
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| T |
18235087 |
tcttttat |
18235094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 30496476 - 30496412
Alignment:
| Q |
177 |
taatcaatttagtttt-gaatgtgttttatgttgatcaatttaatacat-aaattactaataaaa |
239 |
Q |
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||||||||||| |||| ||||||||||| | |||||||||||| | ||| ||||||||||||||| |
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| T |
30496476 |
taatcaatttaatttttgaatgtgttttttattgatcaatttagtccataaaattactaataaaa |
30496412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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