View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7597_high_8 (Length: 287)
Name: NF7597_high_8
Description: NF7597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7597_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 34 - 275
Target Start/End: Original strand, 31567180 - 31567421
Alignment:
| Q |
34 |
ctaatcataatcacaacttacttagctatttcaagattatcattggcaaatttctttgcagcaaacttaacataacccaaagcataaggagtctcaaacc |
133 |
Q |
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| T |
31567180 |
ctaatcataatcacaacttacttagctatttcaagattatcattggcaaatttctttgcagcaaacttaacataacccaaagcataaggagtctcaaacc |
31567279 |
T |
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| Q |
134 |
aaccaatgttaaatcttccataaacataaccaaatttagcatcttcaaaatacccattttgatacaaatgatacaaaaacatcaccgtttcaactgaaag |
233 |
Q |
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| T |
31567280 |
aaccaatgttaaatcttccataaacataaccaaatttagcatcttcaaaatacccattttgatacaaatgatacaaaaacatcaccgtttcaactgaaag |
31567379 |
T |
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| Q |
234 |
ctcctcaacaacaaatcgttctctcatcttctgcttcttctc |
275 |
Q |
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| T |
31567380 |
ctcctcaacaacaaatcgttctctcatcttctgcttcttctc |
31567421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 275
Target Start/End: Original strand, 31562008 - 31562245
Alignment:
| Q |
38 |
tcataatcacaacttacttagctatttcaagattatcattggcaaatttctttgcagcaaacttaacataacccaaagcataaggagtctcaaaccaacc |
137 |
Q |
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| T |
31562008 |
tcatcatcataacttactcagcgatttgaggattatcagtggcaaatttcatcgcagcaaacttagcatagcccaatgcatattgtttgttaaaccaaac |
31562107 |
T |
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| Q |
138 |
aatgttaaatcttcca-taaacataaccaaatttagcatcttcaaaatacccattttgatacaaatgatacaaaaacatcaccgtttcaactgaaagctc |
236 |
Q |
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| T |
31562108 |
aagttgaaatcttgtactaaacttaga-aaatttagcatctttaaaatacccattttggtataaatgcttcaaaaacatgaccatatcaactgaaagctc |
31562206 |
T |
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| Q |
237 |
ctcaacaacaaatcgttctctcatcttctgcttcttctc |
275 |
Q |
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| T |
31562207 |
cttagcaacaaatggttccttcttgttctgcttcttctc |
31562245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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