View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7597_high_9 (Length: 285)
Name: NF7597_high_9
Description: NF7597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7597_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 51730292 - 51730549
Alignment:
| Q |
18 |
ccaataaaccaacataaatccgcaactattcaaatcaacagatgcaacaattttgccnnnnnnnnn--acaatattgggcgggacttgatttccagaatg |
115 |
Q |
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| T |
51730292 |
ccaataaaccaacataaatccgcaactattcaaatcaacagatgcaacaattttgcctttttttttttacaatattgggcgggacttgatttccagaatg |
51730391 |
T |
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| Q |
116 |
aggtttacatgttcatattttaacatgtaaattgaaattaagttttggaaaagtgataaactagtgtaattctgttgctaaaggggataaaaaatagtag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51730392 |
aggtttacatgttcatattttaacatgtaaattgaaattaagttttggaaaagtgataaactagtgtaattctgttgctaaaggggataaaaaatagtag |
51730491 |
T |
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| Q |
216 |
tcaatattaaaggtttcctaaccttacttgaaaaaccatgtagcatgatacatatatt |
273 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51730492 |
tcaatattaaagatttcctaaccttacttgaaaaaccatgtagcatgatacatatatt |
51730549 |
T |
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