View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7597_low_11 (Length: 225)

Name: NF7597_low_11
Description: NF7597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7597_low_11
NF7597_low_11
[»] scaffold0003 (2 HSPs)
scaffold0003 (24-172)||(42034-42184)
scaffold0003 (24-172)||(35364-35514)
[»] chr6 (4 HSPs)
chr6 (24-172)||(27445174-27445324)
chr6 (25-169)||(20909672-20909818)
chr6 (25-169)||(20924120-20924266)
chr6 (102-158)||(22081882-22081938)
[»] chr7 (2 HSPs)
chr7 (93-172)||(11504531-11504610)
chr7 (104-154)||(18939810-18939860)
[»] chr8 (2 HSPs)
chr8 (36-172)||(43227241-43227378)
chr8 (93-169)||(42312856-42312932)
[»] chr1 (1 HSPs)
chr1 (25-169)||(41326566-41326712)
[»] chr4 (2 HSPs)
chr4 (106-143)||(30180301-30180338)
chr4 (102-158)||(37618034-37618090)


Alignment Details
Target: scaffold0003 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 42034 - 42184
Alignment:
Q  24 gaaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggatgaaagttagatatcttcgacaacaaagatatcttcctgtca 121  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||||    
T  42034 gaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtca 42133  T
Q  122 aacaacatttgattctaaaactattgcttcatcctatagtagtggttttaa 172  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42134 atcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa 42184  T

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Target: scaffold0003; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 35364 - 35514
Alignment:
Q  24 gaaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggatgaaagttagatatcttcgacaacaaagatatcttcctgtca 121  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||||    
T  35364 gaaataatcgatcatagaatataataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtca 35463  T
Q  122 aacaacatttgattctaaaactattgcttcatcctatagtagtggttttaa 172  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35464 atcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa 35514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 27445324 - 27445174
Alignment:
Q  24 gaaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggatgaaagttagatatcttcgacaacaaagatatcttcctgtca 121  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||||    
T  27445324 gaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtca 27445225  T
Q  122 aacaacatttgattctaaaactattgcttcatcctatagtagtggttttaa 172  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27445224 atcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa 27445174  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 20909672 - 20909818
Alignment:
Q  25 aaataatcgatcatagaatctaataaggtaatataacataacaacaaacac---gggatgaaagttagatatcttcgacaacaaagatatcttcctgtca 121  Q
    |||||||  |||||||||| | |||| ||||||||||||||||| ||||||   || || || || |||  ||||| |  ||| ||| |||||||||||     
T  20909672 aaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatcaa-gtaagacgtcttctattacagagagatcttcctgtcg 20909770  T
Q  122 aacaacatttgattctaaaactattgcttcatcctatagtagtggttt 169  Q
    ||||||| |||||||||||||| |||||||||| ||| | ||||||||    
T  20909771 aacaacacttgattctaaaactcttgcttcatcatatggcagtggttt 20909818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 20924120 - 20924266
Alignment:
Q  25 aaataatcgatcatagaatctaataaggtaatataacataacaacaaacac---gggatgaaagttagatatcttcgacaacaaagatatcttcctgtca 121  Q
    |||||||  |||||||||| | |||| ||||||||||||||||| ||||||   || || || || |||  ||||| |  ||| ||| |||||||||||     
T  20924120 aaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatcaa-gtaagacgtcttctattacagagagatcttcctgtcg 20924218  T
Q  122 aacaacatttgattctaaaactattgcttcatcctatagtagtggttt 169  Q
    ||||||| |||||||||||||| |||||||||| ||| | ||||||||    
T  20924219 aacaacacttgattctaaaactcttgcttcatcatatggcagtggttt 20924266  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 22081938 - 22081882
Alignment:
Q  102 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctat 158  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | |||||||||||    
T  22081938 acaaagataacttcatgtcaaacaacgcttgattctaaaactcctacttcatcctat 22081882  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 11504610 - 11504531
Alignment:
Q  93 tcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaa 172  Q
    |||||||  |||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||| |||||||||||||    
T  11504610 tcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtggttttaa 11504531  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 18939810 - 18939860
Alignment:
Q  104 aaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatc 154  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||| ||||||    
T  18939810 aaagatatcttccttccaaacaacacttgattctaaaactcttgattcatc 18939860  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 43227378 - 43227241
Alignment:
Q  36 catagaatctaataaggtaatataacataacaacaaacacgggatga-aagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgat 134  Q
    |||| ||||| |||| |||||||||||||| ||||||||||  | |  |||| | || ||||| || | | |||||||||||||||||| |||| |||||    
T  43227378 cataaaatctgataaagtaatataacataataacaaacacgctacgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaagaacacttgat 43227279  T
Q  135 tctaaaactattgcttcatcctatagtagtggttttaa 172  Q
    ||||||||| |||||||||||||| ||||| |||||||    
T  43227278 tctaaaactcttgcttcatcctatggtagtagttttaa 43227241  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 42312856 - 42312932
Alignment:
Q  93 tcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttt 169  Q
    |||||||  ||| ||| ||||||||||| ||||||| |||||||||| ||| |||||||||| ||| | ||||||||    
T  42312856 tcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatggcagtggttt 42312932  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 41326566 - 41326712
Alignment:
Q  25 aaataatcgatcatagaatctaataaggtaatataacataacaacaaacac---gggatgaaagttagatatcttcgacaacaaagatatcttcctgtca 121  Q
    |||||||  |||||||||| | |||| ||||||||||||||||| ||||||   || || || || |||  |||||||  ||| ||| |||||||||||     
T  41326566 aaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatcaa-gtaagacgtcttcgattacagagagatcttcctgtcg 41326664  T
Q  122 aacaacatttgattctaaaactattgcttcatcctatagtagtggttt 169  Q
    ||||| | |||||||||||||| |||||||||| ||| | ||||||||    
T  41326665 aacaaaacttgattctaaaactcttgcttcatcatatggcagtggttt 41326712  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 30180338 - 30180301
Alignment:
Q  106 agatatcttcctgtcaaacaacatttgattctaaaact 143  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  30180338 agatatcttcttgtcaaacaacaattgattctaaaact 30180301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 37618034 - 37618090
Alignment:
Q  102 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctat 158  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | |||||||||||    
T  37618034 acaaagataacttcatgtcaaacaacgcttgattctaaaactccttcttcatcctat 37618090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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