View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7597_low_2 (Length: 639)

Name: NF7597_low_2
Description: NF7597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7597_low_2
NF7597_low_2
[»] chr8 (29 HSPs)
chr8 (262-409)||(12596784-12596930)
chr8 (330-409)||(17153535-17153614)
chr8 (330-409)||(26938955-26939034)
chr8 (313-384)||(8026220-8026291)
chr8 (330-409)||(17157069-17157148)
chr8 (330-409)||(24916129-24916208)
chr8 (526-624)||(15243420-15243518)
chr8 (330-409)||(17219796-17219877)
chr8 (526-624)||(28932313-28932411)
chr8 (332-409)||(26938696-26938773)
chr8 (526-624)||(12607879-12607975)
chr8 (526-624)||(1758704-1758802)
chr8 (330-409)||(24292272-24292351)
chr8 (330-409)||(42024077-42024156)
chr8 (350-408)||(16483761-16483819)
chr8 (527-624)||(12563221-12563318)
chr8 (345-405)||(10467580-10467640)
chr8 (330-409)||(39344580-39344659)
chr8 (355-405)||(41828016-41828066)
chr8 (316-383)||(2415069-2415136)
chr8 (330-409)||(43651357-43651436)
chr8 (330-383)||(26938538-26938591)
chr8 (373-409)||(2414911-2414947)
chr8 (329-405)||(33038211-33038287)
chr8 (355-405)||(35865892-35865942)
chr8 (351-392)||(12911025-12911066)
chr8 (330-383)||(26938776-26938829)
chr8 (331-407)||(26736036-26736112)
chr8 (330-378)||(37959955-37960003)
[»] chr2 (31 HSPs)
chr2 (15-253)||(39406751-39406987)
chr2 (526-624)||(45036141-45036239)
chr2 (351-409)||(855583-855641)
chr2 (526-624)||(37192947-37193045)
chr2 (520-624)||(4653616-4653720)
chr2 (329-409)||(29242653-29242733)
chr2 (520-624)||(44440357-44440461)
chr2 (330-409)||(24490644-24490723)
chr2 (330-409)||(35954222-35954300)
chr2 (330-407)||(34904008-34904085)
chr2 (337-409)||(6191094-6191166)
chr2 (520-624)||(6571117-6571221)
chr2 (330-409)||(30641117-30641196)
chr2 (526-624)||(8271212-8271310)
chr2 (332-405)||(10077604-10077676)
chr2 (330-407)||(31994817-31994894)
chr2 (330-407)||(37284276-37284353)
chr2 (330-409)||(8794574-8794652)
chr2 (330-408)||(30669099-30669175)
chr2 (342-408)||(30632630-30632696)
chr2 (544-617)||(45041847-45041920)
chr2 (345-401)||(43910176-43910232)
chr2 (330-409)||(39293202-39293281)
chr2 (174-247)||(535338-535411)
chr2 (353-405)||(27694610-27694662)
chr2 (342-408)||(30660409-30660475)
chr2 (331-376)||(7529213-7529258)
chr2 (325-394)||(11711254-11711323)
chr2 (365-409)||(434613-434657)
chr2 (329-401)||(17448888-17448960)
chr2 (333-405)||(36773985-36774056)
[»] chr4 (20 HSPs)
chr4 (526-624)||(47924360-47924458)
chr4 (330-409)||(15882223-15882302)
chr4 (318-409)||(40390875-40390966)
chr4 (520-624)||(41940635-41940739)
chr4 (330-408)||(38377805-38377883)
chr4 (329-405)||(33609939-33610016)
chr4 (520-617)||(27184867-27184964)
chr4 (529-606)||(40656252-40656329)
chr4 (342-405)||(15025787-15025850)
chr4 (526-601)||(50945895-50945970)
chr4 (351-405)||(33978504-33978557)
chr4 (330-392)||(40391086-40391147)
chr4 (17-55)||(50430996-50431034)
chr4 (331-408)||(22593377-22593454)
chr4 (330-407)||(31050069-31050146)
chr4 (336-409)||(47472189-47472261)
chr4 (330-408)||(33894478-33894556)
chr4 (520-622)||(54259305-54259407)
chr4 (366-407)||(14806127-14806168)
chr4 (330-383)||(15025981-15026034)
[»] scaffold0478 (2 HSPs)
scaffold0478 (330-409)||(3219-3298)
scaffold0478 (330-409)||(8597-8676)
[»] chr7 (21 HSPs)
chr7 (330-409)||(28555278-28555357)
chr7 (337-409)||(34471227-34471299)
chr7 (330-409)||(27567758-27567837)
chr7 (320-405)||(25067639-25067724)
chr7 (330-409)||(11297755-11297834)
chr7 (520-624)||(25828485-25828589)
chr7 (355-409)||(41232860-41232914)
chr7 (526-624)||(5464648-5464746)
chr7 (520-606)||(10329078-10329164)
chr7 (351-409)||(28098550-28098608)
chr7 (329-409)||(20132050-20132130)
chr7 (330-405)||(21367167-21367242)
chr7 (331-402)||(40751730-40751801)
chr7 (174-256)||(42086011-42086093)
chr7 (330-399)||(28545220-28545289)
chr7 (325-394)||(31600238-31600307)
chr7 (330-376)||(5582664-5582710)
chr7 (354-408)||(7379088-7379142)
chr7 (351-405)||(38487338-38487392)
chr7 (366-407)||(12925246-12925287)
chr7 (331-391)||(20463003-20463063)
[»] chr3 (18 HSPs)
chr3 (526-624)||(43445407-43445505)
chr3 (330-405)||(34359328-34359403)
chr3 (330-408)||(39340768-39340846)
chr3 (330-409)||(20336778-20336857)
chr3 (530-624)||(17508659-17508753)
chr3 (175-256)||(58179-58260)
chr3 (331-408)||(50334728-50334805)
chr3 (329-409)||(44446944-44447024)
chr3 (330-409)||(52423007-52423084)
chr3 (330-409)||(20314885-20314964)
chr3 (520-624)||(50425906-50426010)
chr3 (526-624)||(53590140-53590238)
chr3 (333-409)||(13899466-13899540)
chr3 (330-409)||(22853464-22853540)
chr3 (330-382)||(45857590-45857642)
chr3 (526-624)||(7320263-7320360)
chr3 (330-384)||(52423199-52423253)
chr3 (366-407)||(16607666-16607707)
[»] chr6 (19 HSPs)
chr6 (329-409)||(3807065-3807145)
chr6 (332-404)||(4405872-4405943)
chr6 (330-406)||(10516664-10516740)
chr6 (330-409)||(24672267-24672346)
chr6 (330-409)||(25042926-25043004)
chr6 (331-409)||(12611793-12611871)
chr6 (351-409)||(3336078-3336136)
chr6 (335-409)||(4409546-4409619)
chr6 (526-624)||(10992955-10993053)
chr6 (355-409)||(17141878-17141932)
chr6 (520-617)||(2443246-2443343)
chr6 (329-409)||(17957026-17957106)
chr6 (330-409)||(6197808-6197886)
chr6 (527-624)||(29047190-29047284)
chr6 (582-624)||(6862592-6862634)
chr6 (331-408)||(10311636-10311713)
chr6 (366-404)||(32003156-32003194)
chr6 (329-379)||(34187672-34187722)
chr6 (366-407)||(14896834-14896875)
[»] chr1 (22 HSPs)
chr1 (331-408)||(50919373-50919449)
chr1 (520-624)||(11075781-11075885)
chr1 (335-409)||(29307679-29307753)
chr1 (527-624)||(18565796-18565893)
chr1 (330-406)||(33753055-33753130)
chr1 (526-624)||(16824192-16824289)
chr1 (350-408)||(20985945-20986003)
chr1 (528-610)||(39997603-39997685)
chr1 (526-624)||(2887495-2887592)
chr1 (350-408)||(13392827-13392885)
chr1 (325-394)||(41667349-41667418)
chr1 (329-405)||(16545505-16545581)
chr1 (355-405)||(14941101-14941151)
chr1 (355-405)||(14951108-14951158)
chr1 (355-405)||(14955349-14955399)
chr1 (528-624)||(9427665-9427761)
chr1 (350-409)||(3891463-3891522)
chr1 (330-405)||(35218056-35218131)
chr1 (342-409)||(37471024-37471091)
chr1 (362-408)||(15800838-15800884)
chr1 (330-392)||(23230793-23230855)
chr1 (357-409)||(29102861-29102913)
[»] chr5 (24 HSPs)
chr5 (329-409)||(19343548-19343628)
chr5 (332-408)||(26724110-26724186)
chr5 (330-409)||(39058549-39058628)
chr5 (330-383)||(5459048-5459101)
chr5 (332-405)||(14820511-14820584)
chr5 (330-398)||(15069928-15069996)
chr5 (529-624)||(12292027-12292122)
chr5 (330-409)||(21114566-21114645)
chr5 (330-409)||(38948520-38948599)
chr5 (355-405)||(2160372-2160422)
chr5 (329-392)||(6502368-6502433)
chr5 (363-409)||(16089715-16089761)
chr5 (174-256)||(22976058-22976140)
chr5 (355-404)||(3137151-3137200)
chr5 (331-408)||(3746672-3746748)
chr5 (370-409)||(5459229-5459268)
chr5 (329-384)||(26724316-26724371)
chr5 (330-408)||(2299247-2299324)
chr5 (351-393)||(4294815-4294857)
chr5 (363-409)||(38607326-38607372)
chr5 (330-379)||(38948731-38948780)
chr5 (331-383)||(1298899-1298951)
chr5 (528-624)||(12291878-12291974)
chr5 (330-406)||(36235751-36235827)
[»] scaffold0720 (1 HSPs)
scaffold0720 (330-409)||(5557-5636)
[»] scaffold1911 (1 HSPs)
scaffold1911 (353-409)||(1-57)
[»] scaffold0233 (1 HSPs)
scaffold0233 (330-409)||(17015-17094)
[»] scaffold0013 (1 HSPs)
scaffold0013 (520-624)||(54849-54953)
[»] scaffold0264 (1 HSPs)
scaffold0264 (350-408)||(19819-19877)
[»] scaffold0633 (1 HSPs)
scaffold0633 (325-394)||(7809-7878)
[»] scaffold0036 (1 HSPs)
scaffold0036 (329-384)||(48331-48386)
[»] scaffold0020 (1 HSPs)
scaffold0020 (331-409)||(152262-152340)
[»] scaffold0005 (2 HSPs)
scaffold0005 (354-409)||(253837-253892)
scaffold0005 (366-407)||(33559-33600)
[»] scaffold0002 (1 HSPs)
scaffold0002 (366-407)||(363166-363207)


Alignment Details
Target: chr8 (Bit Score: 112; Significance: 3e-56; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 262 - 409
Target Start/End: Original strand, 12596784 - 12596930
Alignment:
Q  262 ttaaaataatacgtcatctttatctatactatttaaaaacggcataattcctttatatataaaatatagttaaatatgtatttagtctctacaaaatcat 361  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||  ||||||||||| ||||||||||||||||||||    
T  12596784 ttaaaataatacgtcagctttatctatactatttaaaaatggcataattcctttacatataaa-tagggttaaatatgtttttagtctctacaaaatcat 12596882  T
Q  362 aagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12596883 aagtttttaagtttagtccctataaaattttaatggtaattttagtcc 12596930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 17153535 - 17153614
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||    
T  17153535 gttaaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcc 17153614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 26939034 - 26938955
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||  ||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  26939034 gttaaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaattttagtcc 26938955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 8026291 - 8026220
Alignment:
Q  313 tttatatataaaatatagttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctat 384  Q
    |||||||| ||||||  ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  8026291 tttatatagaaaatagggttaaatatgtatttagtccctacaaaattataagtttttaagtttagtccctat 8026220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 17157148 - 17157069
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| |||||||||||| | |||||||  ||||||||||| ||||||||||||||||||||||||    
T  17157148 gttaaatatgtttttagtccctacaaaatcatgattttttaaacttagtccctatgaaattttaatggtaattttagtcc 17157069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 24916208 - 24916129
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||||||  || |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  24916208 gttaaatatgtttttagtccatataaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttcgtcc 24916129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 526 - 624
Target Start/End: Original strand, 15243420 - 15243518
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| | | |||||| |||| |||| | |||| || |||||||||||||||||||||| ||||||||||||||||| | |||||||||||    
T  15243420 gtcaacattatttgtaagagtgattgttttgaagtagttgacctgattattgatggtcatgatcataccttgcacacttatgctactcacatccttcat 15243518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 17219877 - 17219796
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagt--ttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||||||||||||||||||| || |||||||   ||||||||||| ||||||||||||||||||||||||    
T  17219877 gttaaatatgtttttagtctctacaaaatcatgagattttaagcgcttagtccctatgaaattttaatggtaattttagtcc 17219796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 28932411 - 28932313
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| ||| |||||| ||||||||||| |||| || ||||||| ||| | |||||||| ||||||||||||| ||| |||||||||||||    
T  28932411 gtcaacattatttgtgagagtgattgtttggaagcagttgacctgattattgctggccgtgatcataccttgcacacttatactactgacatccttcat 28932313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 332 - 409
Target Start/End: Complemental strand, 26938773 - 26938696
Alignment:
Q  332 taaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||  ||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  26938773 taaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaatttttgtcc 26938696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 526 - 624
Target Start/End: Original strand, 12607879 - 12607975
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| |||  ||||| ||||||||||| | || || ||||||||||||| | |||||| ||||||||||||||||| |||||||||||||    
T  12607879 gtcaacattatttgtga--gtgattgtttggaagcagtagacctgattattgatggtcgtaatcatatcttgcacacttatgctactgacatccttcat 12607975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 1758802 - 1758704
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| ||| |||||| |||||||||||||||| || ||||||| | ||  |||||||| ||||||||||||||| | | |||||||||||    
T  1758802 gtcaacattatttgtgagagtgattgtttggaagcaattgacctgattattgctagttgtgatcataccttgcacacttatgccactaacatccttcat 1758704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 24292351 - 24292272
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||| ||| ||||||| ||| ||||||| ||| ||| ||||||||||||||| |||||||||| |||||||||||||    
T  24292351 gttaaatgtgtttttagtccctaaaaaatcacaagctttcaagtttagtccctattaaattttaattgtaattttagtcc 24292272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 42024156 - 42024077
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||||||  ||||||||||  ||||||| ||||||||||| || ||||||||||| ||||||||||||    
T  42024156 gttaaatatgtgtttagtccttacaaaatcacgagtttttgagtttagtccccataaaattttaatgctaattttagtcc 42024077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 16483761 - 16483819
Alignment:
Q  350 ctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    ||||| |||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  16483761 ctacagaatcatgagtttttaagtttagtccctgtaaaattttaatggtaattttagtc 16483819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 624
Target Start/End: Original strand, 12563221 - 12563318
Alignment:
Q  527 tcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    |||||||||||| ||| |||||| ||||||||| | |||| || ||||||| ||||| ||||||||  ||| ||||||||||||  ||||||||||||    
T  12563221 tcaacattatttgtgagagtgattgtttggaagtagttgacctgattattgttggtcgtgatcatactttgaacacttatgctaccgacatccttcat 12563318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 10467640 - 10467580
Alignment:
Q  345 agtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||||||||||||| || |||||||||||| ||| ||| ||||||||||||||||||||    
T  10467640 agtctctacaaaatcacaaatttttaagtttattccttataaaattttaatggtaatttta 10467580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 39344580 - 39344659
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||| | ||||||   ||||||||||||| ||||||| || ||||||||| ||||||||||||||| ||||||||    
T  39344580 gttaaatatatttttagttcatacaaaatcataaatttttaaattaagtccctataaaattttaatggtaactttagtcc 39344659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 41828016 - 41828066
Alignment:
Q  355 aaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  41828016 aaatcataagtttttaagtttagtcgatataaaattttaatggtaatttta 41828066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 2415136 - 2415069
Alignment:
Q  316 atatataaaatatagttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtcccta 383  Q
    |||||||  |||| ||||||||||| ||||||| ||||||||| ||||| |||||||||||| |||||    
T  2415136 atatatattatatggttaaatatgtttttagtccctacaaaattataagcttttaagtttagccccta 2415069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 43651357 - 43651436
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||||| |||| ||||||| ||  |||||||||||||  |||  ||||||||||| ||||||||||||    
T  43651357 gttaaatatgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaattttaatgataattttagtcc 43651436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 26938538 - 26938591
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtcccta 383  Q
    ||||||||||| ||||||| ||||||||| | ||| ||||||||||||||||||    
T  26938538 gttaaatatgtttttagtccctacaaaattacaagcttttaagtttagtcccta 26938591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 2414911 - 2414947
Alignment:
Q  373 tttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||| ||||||||||||||||||||||||    
T  2414911 tttagtccctataaaattttaatggtaattttagtcc 2414947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 405
Target Start/End: Original strand, 33038211 - 33038287
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    ||||||| |||| ||||||| |||||||| ||| |  ||||||||||||| ||||| |||||||||||  |||||||    
T  33038211 agttaaaaatgtttttagtccctacaaaaacatcaacttttaagtttagttcctattaaattttaatgaaaatttta 33038287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 35865892 - 35865942
Alignment:
Q  355 aaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||| |||||||||||||||||   ||| ||||||||||||||||||||    
T  35865892 aaatcacaagtttttaagtttagttgatataaaattttaatggtaatttta 35865942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 12911066 - 12911025
Alignment:
Q  351 tacaaaatcataagtttttaagtttagtccctatcaaatttt 392  Q
    ||||||| ||| |||||||||||||||||||||| |||||||    
T  12911066 tacaaaaccattagtttttaagtttagtccctataaaatttt 12911025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 26938776 - 26938829
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtcccta 383  Q
    ||||||||||| ||||||| ||||||||| | ||| ||||| ||||||||||||    
T  26938776 gttaaatatgtttttagtccctacaaaattacaagcttttatgtttagtcccta 26938829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 26736112 - 26736036
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    |||||||||| ||||||   ||||||||||| |||| ||| |||||||  |||| || |||||||| ||||||||||    
T  26736112 ttaaatatgtttttagttcatacaaaatcatgagttattaggtttagtttctataaacttttaatgataattttagt 26736036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 37959955 - 37960003
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagt 378  Q
    ||||||||||| |||| |||| ||||||| |||||||||||| ||||||    
T  37959955 gttaaatatgtttttaatctcgacaaaattataagtttttaaatttagt 37960003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 3e-53; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 39406751 - 39406987
Alignment:
Q  15 aattttggccatgttggatgctttgaaggaaaattagttcaccaataccaactggttttgatgttgtgtgttgcctgaatatcaaattttgaattgaatt 114  Q
    ||||||||||||||||| || ||||||  ||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39406751 aattttggccatgttgggtggtttgaaaaaaaatcagttcacccgtaccaactggttttgatgttgtgtgttgcctgaatatcaaattttgaattgaatt 39406850  T
Q  115 ggtgtagcttgaatatcattaaacttttcattagaa--ttctaannnnnnnnnnnnngtaagtgtactgtttgagcgtatacaaagtaagcgttaatatg 212  Q
    | ||| || ||||||||||||||||||||||| |||  ||||||              || ||||||||||||||||| |  ||||||||||||||||||    
T  39406851 gttgtggcctgaatatcattaaacttttcattggaattttctaatgtttttttc----tacgtgtactgtttgagcgtgtggaaagtaagcgttaatatg 39406946  T
Q  213 cttccgggaaatttcgtatagaaaacacccgtactcaatag 253  Q
    |||||| |||||||||||||||||| || |||||| |||||    
T  39406947 cttccgtgaaatttcgtatagaaaaaactcgtactaaatag 39406987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 45036239 - 45036141
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| ||| |||||| ||||||||||| |||| || |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  45036239 gtcaacattatttgtgagagtgattgtttggaagcagttgacctgattattgatggtgatgatcataccttgcacacttatgctactgacatccttcat 45036141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 855583 - 855641
Alignment:
Q  351 tacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  855583 tacaaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttagtcc 855641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 526 - 624
Target Start/End: Original strand, 37192947 - 37193045
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| |||||||||| |||||||| || || | || ||||||||||||| |||||||| |||||||| |||||||| | |||||||||||    
T  37192947 gtcaacattatttttgaaagtgattgtttggaaacagttaacctgattattgatggtcgtgatcatatcttgcacatttatgctacttacatccttcat 37193045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 624
Target Start/End: Original strand, 4653616 - 4653720
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatcc 619  Q
    ||||| || |||||||||| ||| |||||| ||||||||||| |||| || ||||||||||||| |||||||| ||| ||||||||||||| | |||||     
T  4653616 ggctatgttaacattatttgtgagagtgattgtttggaagcagttgacctgattattgatggtcgtgatcataccttacacacttatgctactaacatct 4653715  T
Q  620 ttcat 624  Q
    |||||    
T  4653716 ttcat 4653720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 329 - 409
Target Start/End: Complemental strand, 29242733 - 29242653
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||| || ||||||| ||||||||| |  |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  29242733 agttaaatacgtttttagtccctacaaaattaggagttttcaagtttagtccctataaaattttaatggtaattttagtcc 29242653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 624
Target Start/End: Original strand, 44440357 - 44440461
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatcc 619  Q
    ||||| ||||||||||||| ||| |||||| |||||||||||  |||    ||||||||||||| |||||||| ||||||||||||||||| | ||||||    
T  44440357 ggctatgtcaacattatttgtgagagtgattgtttggaagcagatgactcaattattgatggtcgtgatcataccttgcacacttatgctactaacatcc 44440456  T
Q  620 ttcat 624  Q
    |||||    
T  44440457 ttcat 44440461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 24490723 - 24490644
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| ||||||||| ||  |||||||||||||||| |||| |||||||||| |||||||||||||    
T  24490723 gttaaatatgtttttagtccctacaaaattatgtgtttttaagtttagtctctataaaattttaatagtaattttagtcc 24490644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 35954222 - 35954300
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| ||| ||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  35954222 gttaaatatgtttttagtccctataaa-tcacaagttttaaagtttagtccctattaaattttaatggtaattttagtcc 35954300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 330 - 407
Target Start/End: Original strand, 34904008 - 34904085
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| | ||||| ||||  ||||||||||    
T  34904008 gttaaatatgtttttagtccctacaaaatcacaagtttttaagtttagtccctgtaaaattgtaataataattttagt 34904085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 6191094 - 6191166
Alignment:
Q  337 atgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||| |||||| |||| |||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||    
T  6191094 atgtttttagtatctataaaatcattagtattcaagtttagtccctataaaattttaatggtaattttagtcc 6191166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 520 - 624
Target Start/End: Complemental strand, 6571221 - 6571117
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatcc 619  Q
    ||||| ||||||||||||| |||  ||||| ||| |||| || |||| || ||||||| ||||| |||||||| ||| ||||||||||||| ||||||||    
T  6571221 ggctatgtcaacattatttgtgagggtgattgttcggaaacagttgacctgattattgctggtcgtgatcataacttacacacttatgctactgacatcc 6571122  T
Q  620 ttcat 624  Q
    |||||    
T  6571121 ttcat 6571117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 30641196 - 30641117
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| |||||| ||||| |||||||||| ||||||| ||| ||||||||||||||  ||||||||    
T  30641196 gttaaatatgtttttagtccctacaatatcatgagtttttaagcttagtccatatgaaattttaatggtatatttagtcc 30641117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 8271310 - 8271212
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| ||| |||||| ||||||||||| |||| || |||| || ||||  |||||||| |||||||||||||| || |||| ||||||||    
T  8271310 gtcaacattatttgtgagagtgattgtttggaagcagttgacctgattactgctggttgtgatcataccttgcacacttatgttactgacgtccttcat 8271212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 10077604 - 10077676
Alignment:
Q  332 taaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||| |||| |||||||| | ||||||||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  10077604 taaacatgtttttagtctttgcaaaatcatgagttttcaagtttagtccctat-aaattttaatggtaatttta 10077676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 31994894 - 31994817
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    ||||| ||||| ||||||| ||||||||||| || |||||||||||| ||||| | |||||||||| |||||||||||    
T  31994894 gttaagtatgtttttagtccctacaaaatcacaaatttttaagtttaatccctttaaaattttaatagtaattttagt 31994817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 37284353 - 37284276
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    ||||||||| | |||||||  |||||||| || |||||||||||||||||||||| ||||||||||| | ||||||||    
T  37284353 gttaaatatatttttagtccttacaaaattatgagtttttaagtttagtccctataaaattttaatgatgattttagt 37284276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 8794574 - 8794652
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||| ||||| || |||| ||||||||||| || |||| ||||||||||| ||| ||||||||||||||||||||||||    
T  8794574 gttaagtatgttttcagtccctacaaaatcacaaattttcaagtttagtcc-tataaaattttaatggtaattttagtcc 8794652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 30669175 - 30669099
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||||||||  ||||| |||| ||| ||| |||||||||| ||||||| |||| |||||||||||||||||||||||    
T  30669175 gttaaatatgt--ttagtatctaaaaattcagaagtttttaattttagtctctataaaattttaatggtaattttagtc 30669099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 30632696 - 30632630
Alignment:
Q  342 tttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||| |||| ||| ||| |||||||||| ||||||| |||| |||||||||||||||||||||||    
T  30632696 tttagtatctaaaaattcagaagtttttaattttagtctctataaaattttaatggtaattttagtc 30632630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 617
Target Start/End: Complemental strand, 45041920 - 45041847
Alignment:
Q  544 agtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacat 617  Q
    |||||| ||||  ||||| ||||| | |||||||||||| ||||||||| |||||||||||||| |||||||||    
T  45041920 agtgattgtttaaaagcagttgatttaattattgatggtaatgatcatatcttgcacacttatgttattgacat 45041847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 43910176 - 43910232
Alignment:
Q  345 agtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaat 401  Q
    |||| ||||||||||||||||||||||||||| | ||||| |||||||||| |||||    
T  43910176 agtccctacaaaatcataagtttttaagtttaattcctataaaattttaatagtaat 43910232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 39293281 - 39293202
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||| ||  ||||||||||  | ||| || ||||| ||||||| ||||||||||||||||||||||||    
T  39293281 gttaaatatgtttttaatccatacaaaatcacgaatttctaggtttaatccctataaaattttaatggtaattttagtcc 39293202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 535338 - 535411
Alignment:
Q  174 gtgtactgtttgagcgtatacaaagtaagcgttaatatgcttccgggaaatttcgtatagaaaacacccgtact 247  Q
    |||||||||||||||| ||  | ||||||| |||||| |||| || ||||||| ||||| ||||||||||||||    
T  535338 gtgtactgtttgagcgcattgagagtaagcattaataggctttcgtgaaatttggtataaaaaacacccgtact 535411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 405
Target Start/End: Complemental strand, 27694662 - 27694610
Alignment:
Q  353 caaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    ||||||||| |||||||||||||| | ||| ||||||||||| ||||||||||    
T  27694662 caaaatcatgagtttttaagtttaattcctgtcaaattttaaaggtaatttta 27694610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 30660475 - 30660409
Alignment:
Q  342 tttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||| |||| ||| ||| |||||||||| ||||||| |||| ||| ||||||| |||||||||||    
T  30660475 tttagtatctaaaaattcagaagtttttaattttagtctctataaaactttaatgataattttagtc 30660409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 7529213 - 7529258
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagttta 376  Q
    |||||||||||||| |||| || ||||| |||||||||||||||||    
T  7529213 ttaaatatgtatttcgtctttataaaataataagtttttaagttta 7529258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 11711323 - 11711254
Alignment:
Q  325 atatagttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaa 394  Q
    |||||||||||||| | |||||| | || |||||||  || ||| ||||||||||||||| |||||||||    
T  11711323 atatagttaaatatatttttagtttttataaaatcacgagctttcaagtttagtccctataaaattttaa 11711254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 434657 - 434613
Alignment:
Q  365 tttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||||||  ||| ||||||||||||| ||||||||||    
T  434657 tttttaagtttagtcaatataaaattttaatggtgattttagtcc 434613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 401
Target Start/End: Complemental strand, 17448960 - 17448888
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaat 401  Q
    |||||||||||| |||| || ||| ||||| || ||||||||||||||||   ||| ||||||||||| ||||    
T  17448960 agttaaatatgtttttaatccctataaaattatgagtttttaagtttagtttttataaaattttaatgataat 17448888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 36773985 - 36774056
Alignment:
Q  333 aaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||||| ||||||  ||||||| ||| ||||||||| ||| ||| ||||| | ||||||||||||||||||    
T  36773985 aaatatgtttttagttcctacaaactcacaagtttttatgtt-agttcctataagattttaatggtaatttta 36774056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 47924458 - 47924360
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| ||| |||||| ||||||||||| |||| || |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  47924458 gtcaacattatttgtgagagtgattgtttggaagcagttgacctgattattgatgatcatgatcataccttgcacacttatgctactgacatccttcat 47924360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 15882302 - 15882223
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||    
T  15882302 gttaaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcc 15882223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 318 - 409
Target Start/End: Original strand, 40390875 - 40390966
Alignment:
Q  318 atataaaatatagttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||  ||||||||||| ||||||| |||||||||||| |||||| ||||||||| ||||| ||||||||||| ||||||||||||    
T  40390875 atataaaataaggttaaatatgtttttagtccctacaaaatcatgagttttcaagtttagttcctataaaattttaatgataattttagtcc 40390966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 520 - 624
Target Start/End: Complemental strand, 41940739 - 41940635
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatcc 619  Q
    ||||| ||||||||||||| ||| |||||| ||||| ||||| |||| || |||||||| |||| |||||||| |||||||||||||||||  |||||||    
T  41940739 ggctatgtcaacattatttgtgagagtgattgtttgaaagcagttgacctgattattgacggtcgtgatcataccttgcacacttatgctaccgacatcc 41940640  T
Q  620 ttcat 624  Q
    |||||    
T  41940639 ttcat 41940635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 38377805 - 38377883
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    ||||| ||||| |||||||  |||||||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  38377805 gttaagtatgtttttagtccttacaaaatcacaaatttttaagtttagtccctataaaattttaatggtaattttagtc 38377883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 329 - 405
Target Start/End: Original strand, 33609939 - 33610016
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcat-aagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||||||| | |||||||| ||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||    
T  33609939 agttaaatatatttttagtctatacaaaatcatcaagtttttaagtttagttcttataaaattttaatggtaatttta 33610016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 617
Target Start/End: Complemental strand, 27184964 - 27184867
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacat 617  Q
    ||||| || |||||||||| ||| | |||| ||||||||||| ||||  | ||||||||||||| |||||||| ||||||||| ||||||| ||||||    
T  27184964 ggctatgtgaacattatttgtgagaatgattgtttggaagcagttgacttgattattgatggtcgtgatcataccttgcacacatatgctactgacat 27184867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 606
Target Start/End: Complemental strand, 40656329 - 40656252
Alignment:
Q  529 aacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttat 606  Q
    |||||||||| ||| |||||| ||||| ||||| |||| || ||||||| ||||| |||||||| |||||||||||||    
T  40656329 aacattatttgtgagagtgattgtttgaaagcagttgacctgattattgctggtcgtgatcataccttgcacacttat 40656252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 342 - 405
Target Start/End: Original strand, 15025787 - 15025850
Alignment:
Q  342 tttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    ||||||| |||||||||||  |||| ||||||||||| | ||| ||||||||||||||||||||    
T  15025787 tttagtccctacaaaatcacgagttattaagtttagttcttataaaattttaatggtaatttta 15025850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 526 - 601
Target Start/End: Original strand, 50945895 - 50945970
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcaca 601  Q
    ||||||||||||| |||||||||| |||||||| | ||||| || ||||||| ||||| ||||||||  |||||||    
T  50945895 gtcaacattatttgtgaaagtgattgtttggaaccgattgacctgattattgttggtcgtgatcatatgttgcaca 50945970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 33978504 - 33978557
Alignment:
Q  351 tacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    ||||||||||| | |||||||||||||| || |||||||||||||||||||||||    
T  33978504 tacaaaatcatgaatttttaagtttagttcc-atcaaattttaatggtaatttta 33978557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 40391147 - 40391086
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaatttt 392  Q
    ||||||||||| ||||||| ||| ||||| | |||||||||||||||||||||| ||||||||    
T  40391147 gttaaatatgtttttagtccctataaaattacaagtttttaagtttagtcccta-caaatttt 40391086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 50430996 - 50431034
Alignment:
Q  17 ttttggccatgttggatgctttgaaggaaaattagttca 55  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  50430996 ttttggccatgttgaatgctttgaaggaaaattagttca 50431034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 22593454 - 22593377
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||||||| ||| |||  ||| |||||| ||||||| |||||||||  |||| ||||||||||||| |||||||||    
T  22593454 ttaaatatgttttttgtccttacgaaatcacaagttttcaagtttagtttctattaaattttaatggtgattttagtc 22593377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 31050146 - 31050069
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    ||||||||||| |||| || || |||||||| | |||||||||||||| |||||| ||||| |||| |||| ||||||    
T  31050146 gttaaatatgtttttaatccctgcaaaatcacatgtttttaagtttagcccctataaaattataattgtaaatttagt 31050069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 47472189 - 47472261
Alignment:
Q  336 tatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||| ||| ||| ||||||||| | || |||||||||||||| | ||| ||||||||||||||||||||||||    
T  47472189 tatgtgtttggtccctacaaaattacaaatttttaagtttagttc-tataaaattttaatggtaattttagtcc 47472261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 33894556 - 33894478
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||||||||  |||||  ||||||||||| || |||| ||||||| ||  ||| ||||||||||| |||||||||||    
T  33894556 gttaaatatgtcgttagttcctacaaaatcacaaattttcaagtttaatctgtataaaattttaatgttaattttagtc 33894478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 622
Target Start/End: Original strand, 54259305 - 54259407
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatcc 619  Q
    ||||| ||||||||||||| ||| |||||| ||||||||||| |||| ||  |||||| ||||  |||| ||| | | |||||||||| || ||| ||||    
T  54259305 ggctatgtcaacattatttgtgagagtgattgtttggaagcagttgacctgtttattgctggttgtgatgataacctacacacttatgttactgatatcc 54259404  T
Q  620 ttc 622  Q
    |||    
T  54259405 ttc 54259407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 14806127 - 14806168
Alignment:
Q  366 ttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||    
T  14806127 ttttaagtttagttcctataaaattttaatgataattttagt 14806168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 15026034 - 15025981
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtcccta 383  Q
    ||||||||||| ||||||| ||||||||| | ||  ||||||||||||||||||    
T  15026034 gttaaatatgtttttagtcactacaaaattacaaacttttaagtttagtcccta 15025981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 3219 - 3298
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| |||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  3219 gttaaatatgtttttagtccctacaaaatcatgagtttttaagcttaatccctatgaaattttaatggtaattttagtcc 3298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 8597 - 8676
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| ||| |||||||| |||||||||| |||||||| || ||||||||||||||||||||||||    
T  8597 gttaaatatgtttttagtccctaaaaaatcatgagtttttaagcttagtcccaatgaaattttaatggtaattttagtcc 8676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 28555278 - 28555357
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||||||||||||||||| | | |||||||||||||||| ||| ||||||||||||||||||||||||    
T  28555278 gttaaatatgtttttagtctctacaaaatcgtgattttttaagtttagtccatataaaattttaatggtaattttagtcc 28555357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 34471227 - 34471299
Alignment:
Q  337 atgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||| ||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  34471227 atgtttttagtccctacaaaatcacaagcttttaagtttagtccctataaaattttaatggtaattttagtcc 34471299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 27567837 - 27567758
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||| | ||||||| |||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  27567837 gttaaatatatttttagtccctacaaaatcatgagttttaaagtttattccctataaaattttaatggtaattttagtcc 27567758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 320 - 405
Target Start/End: Original strand, 25067639 - 25067724
Alignment:
Q  320 ataaaatatagttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||| || ||||||||||| |||| ||||||||||||||||| ||||||||||| ||  |||| ||||||||||||||||||||    
T  25067639 ataaaagatggttaaatatgtttttaatctctacaaaatcataaatttttaagtttggtttctataaaattttaatggtaatttta 25067724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 11297755 - 11297834
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||| || ||||||||| || |||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  11297755 gttaaatatgtttttattccctacaaaataatgagtttttaagcttagttcctatgaaattttaatggtaattttagtcc 11297834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 520 - 624
Target Start/End: Complemental strand, 25828589 - 25828485
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatcc 619  Q
    ||||| ||||||||||| | ||| |||||| ||||| ||||| |||| || ||| ||| ||||| |||||||| |||||| | |||||||||||||||||    
T  25828589 ggctatgtcaacattatatgtgagagtgattgtttgaaagcagttgacctgattgttgttggtcgtgatcataccttgcagagttatgctattgacatcc 25828490  T
Q  620 ttcat 624  Q
    |||||    
T  25828489 ttcat 25828485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 41232860 - 41232914
Alignment:
Q  355 aaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  41232860 aaatcataagtttttaagtttagtcgatattaaattttaatggtaattttagtcc 41232914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 5464746 - 5464648
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| | | |||| | ||||||||||| |||| |||||||||| || |  |||||||| ||||||||||||||||| |  ||||||||||    
T  5464746 gtcaacattatttgttagagtggttgtttggaagcagttgaccttattattgttgattttgatcataccttgcacacttatgctactagcatccttcat 5464648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 606
Target Start/End: Complemental strand, 10329164 - 10329078
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttat 606  Q
    ||||| ||||||||| ||| ||| |||||| ||| ||||| | |||| || ||||||||||||| |||||||| |||||||||||||    
T  10329164 ggctatgtcaacattttttgtgagagtgattgttaggaaggagttgacctgattattgatggtcgtgatcataccttgcacacttat 10329078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 28098550 - 28098608
Alignment:
Q  351 tacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||||||||| |||  ||| ||||||||||||||||||||||||    
T  28098550 tacaaaatcatgagtttttaagtttggtctttataaaattttaatggtaattttagtcc 28098608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 20132050 - 20132130
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||| ||||||| ||| | ||| || ||||||||||||||||  | || |||||||||| |||||||||||||    
T  20132050 agttaaatatgtttttagtccctatataattatgagtttttaagtttagtttcaataaaattttaattgtaattttagtcc 20132130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 21367167 - 21367242
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    ||||||||||| ||||| | ||| ||||| || ||||||||| |||||||  ||| ||||||||||||||||||||    
T  21367167 gttaaatatgtttttagcccctataaaattatgagtttttaaatttagtctttataaaattttaatggtaatttta 21367242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 402
Target Start/End: Complemental strand, 40751801 - 40751730
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatt 402  Q
    |||||||| | |||| ||| |||||||| ||||||||| ||||||||| ||||| ||||||||||| |||||    
T  40751801 ttaaatatatttttaatctgtacaaaattataagttttcaagtttagttcctataaaattttaatgctaatt 40751730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 42086011 - 42086093
Alignment:
Q  174 gtgtactgtttgagcgtatacaaagtaagcgttaatatgcttccgggaaatttcgtatagaaaacacccgtactcaatagcaa 256  Q
    |||||||||||||||| ||  | ||||||| |||||| |||||||  |||||||||||| |||||| |||||||  |||||||    
T  42086011 gtgtactgtttgagcgcatggagagtaagcattaataggcttccgtaaaatttcgtataaaaaacatccgtactatatagcaa 42086093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 28545289 - 28545220
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggta 399  Q
    ||||||||||| ||||||| |||||||||||||| |||| |||| ||||  |||| |||| |||||||||    
T  28545289 gttaaatatgtttttagtccctacaaaatcataaattttaaagtgtagtttctataaaatattaatggta 28545220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 31600307 - 31600238
Alignment:
Q  325 atatagttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaa 394  Q
    |||| ||||||||||| |||||| | |||||||| || || ||||||||||||||||||| | |||||||    
T  31600307 atatggttaaatatgtttttagtttttacaaaattatgagattttaagtttagtccctattacattttaa 31600238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 5582664 - 5582710
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagttta 376  Q
    ||||||||||| |||||||| |||||||| || ||||||||||||||    
T  5582664 gttaaatatgtttttagtctatacaaaattattagtttttaagttta 5582710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 7379088 - 7379142
Alignment:
Q  354 aaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    ||||| ||||||||||||||||| ||| ||| ||||||||||| | |||||||||    
T  7379088 aaaattataagtttttaagtttaatccttataaaattttaatgattattttagtc 7379142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 38487338 - 38487392
Alignment:
Q  351 tacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||||| | || |||||||||||||||  ||| ||||||||||||||||||||    
T  38487338 tacaaaattacaaatttttaagtttagtctttataaaattttaatggtaatttta 38487392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 12925246 - 12925287
Alignment:
Q  366 ttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||    
T  12925246 ttttaagtttagttcctataaaattttaatgataattttagt 12925287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 20463063 - 20463003
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattt 391  Q
    |||||||||| |||||| | |||||||| || || |||||||||||||| |||| ||||||    
T  20463063 ttaaatatgtttttagtttttacaaaattatgagcttttaagtttagtcactattaaattt 20463003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 526 - 624
Target Start/End: Original strand, 43445407 - 43445505
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| ||| ||| || ||||||||||| |||| ||||||||||  |||| |||||||| ||||||||||||||||||||| |||||||||    
T  43445407 gtcaacattatttgtgagagtaattgtttggaagcagttgaccttattattgtcggtcgtgatcataccttgcacacttatgctattgatatccttcat 43445505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 34359328 - 34359403
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    ||||||||||| |||||||  ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||    
T  34359328 gttaaatatgtttttagtccttacaaaatcatgagtttttaagtttagtccatataaaattttaatggtaatttta 34359403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 39340768 - 39340846
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    ||||||||||| || |||| |||||||||||  |||||||||||||||||||||| || ||||||||||||||||||||    
T  39340768 gttaaatatgttttgagtccctacaaaatcactagtttttaagtttagtccctataaagttttaatggtaattttagtc 39340846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 20336778 - 20336857
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| |||||||||||  |||||| || |||||||| ||| ||||||||||||||||||||||||    
T  20336778 gttaaatatgtttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggtaattttagtcc 20336857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 530 - 624
Target Start/End: Original strand, 17508659 - 17508753
Alignment:
Q  530 acattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||| ||| |||| | ||||||||||| ||||  | ||||||||||||| ||||||||  ||||| |||||||||| |||||||||||||    
T  17508659 acattatttgtgagagtgcttgtttggaagcagttgacttgattattgatggtcgtgatcatacgttgcatacttatgctactgacatccttcat 17508753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 58260 - 58179
Alignment:
Q  175 tgtactgtttgagcgtatacaaagtaagcgttaatatgcttccgggaaatttcgtatagaaaacacccgtactcaatagcaa 256  Q
    ||||||||||||||| ||  | ||||||| |||||| ||||||| ||||||||||||| ||||||||||||||  |||||||    
T  58260 tgtactgtttgagcgcatggagagtaagcattaataggcttccgtgaaatttcgtataaaaaacacccgtactatatagcaa 58179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 50334805 - 50334728
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||||| | ||||||||||| |||||||| ||||||| | |||| ||||||| ||||||||||| |||||||||||    
T  50334805 ttaaatatatttttagtctctataaaatcatgagttttttactttaatccctataaaattttaatgataattttagtc 50334728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 329 - 409
Target Start/End: Complemental strand, 44447024 - 44446944
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||| ||||||| ||| | ||| || |||||||||||||| |||| || |||||||||| |||||||||||||    
T  44447024 agttaaatatgtttttagtccctatataattatgagtttttaagtttaatcccaataaaattttaattgtaattttagtcc 44446944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 52423007 - 52423084
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||  |||||| |||||||||||  |||||| ||||||||||||||| || ||| |||||||||||||||||    
T  52423007 gttaaatatgt--ttagtccctacaaaatcacgagttttcaagtttagtccctataaagtttcaatggtaattttagtcc 52423084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 20314885 - 20314964
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||  ||||||| |||||||||||  |||||| || |||||||| ||| |||||||||||| |||||||||||    
T  20314885 gttaaatatgcttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggcaattttagtcc 20314964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 624
Target Start/End: Original strand, 50425906 - 50426010
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatcc 619  Q
    ||||| |||||| |||||| | | |||||| ||||||||||| |||| || ||||||| || || |||||||| |||| |||||||||  | ||||||||    
T  50425906 ggctacgtcaacgttatttgtaagagtgattgtttggaagcagttgacctgattattgctgatcgtgatcataccttgtacacttatgtcactgacatcc 50426005  T
Q  620 ttcat 624  Q
    |||||    
T  50426006 ttcat 50426010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 53590238 - 53590140
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| ||| |||||| |||| |||| | ||||  |  |||||  ||||| |||||||| |||||||| ||||||||||||||| ||||||    
T  53590238 gtcaacattatttgtgagagtgattgtttcgaaggagttgacatggttattattggtcgtgatcataccttgcacatttatgctattgacattcttcat 53590140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 13899466 - 13899540
Alignment:
Q  333 aaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||| ||||||  ||||| |||||  ||| || ||||||||| ||||| ||||||||||||||||||||||||    
T  13899466 aaatatgtttttagttcctacataatca--agtcttgaagtttagttcctataaaattttaatggtaattttagtcc 13899540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 22853540 - 22853464
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||  || ||||||| ||||| |||| |||||||||| |||  ||||||||||||||||||||||||    
T  22853540 gttaaatatgtttttaccct-tacaaaaccataaattttcaagtttagtctcta--aaattttaatggtaattttagtcc 22853464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 45857590 - 45857642
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccct 382  Q
    ||||||||||| ||||||| |||||||||||||  ||||||||| ||||||||    
T  45857590 gttaaatatgtttttagtccctacaaaatcatacatttttaagtatagtccct 45857642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 7320360 - 7320263
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||  ||| |||||| ||||||||| | | ||  | ||||||| ||| | ||||||||  ||||||||||||||||| ||||||||||||    
T  7320360 gtcaacattattagtgagagtgattgtttggaagaactagacttgattattgttgg-cgtgatcatacattgcacacttatgctatcgacatccttcat 7320263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 52423253 - 52423199
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctat 384  Q
    ||||||||||| ||||||| ||||||||| ||||||||| | ||||| |||||||    
T  52423253 gttaaatatgtttttagtccctacaaaattataagttttcatgtttaatccctat 52423199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 16607707 - 16607666
Alignment:
Q  366 ttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||    
T  16607707 ttttaagtttagttcctataaaattttaatgataattttagt 16607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 3807065 - 3807145
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||| ||||||| ||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  3807065 agttaaatatgtttttagtccctataaaatcataagtttttatgtttagtctctataaaattttaatggtaattttcgtcc 3807145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 332 - 404
Target Start/End: Complemental strand, 4405943 - 4405872
Alignment:
Q  332 taaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttt 404  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  4405943 taaatatgtttttagtc-ctacaaaatcataagtttttaagtttagtccctataaaatattaatggtaatttt 4405872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 10516740 - 10516664
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttag 406  Q
    ||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||    
T  10516740 gttaaatatgtttttagtccctacaaaatcataagtttttaaatttagtccctataaaattgtaatgataattttag 10516664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 24672267 - 24672346
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||| |||||||||| |||  | |||| ||||||||||||||| ||||||||||||||||||||||||    
T  24672267 gttaaatatgtttttaatctctacaaattcacgatttttcaagtttagtccctataaaattttaatggtaattttagtcc 24672346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 25043004 - 25042926
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| |||||||||||| |||||| || |||||| ||||| ||||||||||||||||||||||||    
T  25043004 gttaaatatgtttttagtccctacaaaatcatgagttttcaaatttagt-cctataaaattttaatggtaattttagtcc 25042926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 331 - 409
Target Start/End: Original strand, 12611793 - 12611871
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||| ||||||| |||||||||||| | ||||||| |||| ||||| | ||||||||||||||||||||||||    
T  12611793 ttaaatatgtttttagtccctacaaaatcatgaatttttaaatttaatccctctaaaattttaatggtaattttagtcc 12611871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 3336136 - 3336078
Alignment:
Q  351 tacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||||    
T  3336136 tacaaaatcataaatttttaagtttagaccctataaaattttagtggtaattttagtcc 3336078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 409
Target Start/End: Complemental strand, 4409619 - 4409546
Alignment:
Q  335 atatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||| ||||||| ||||||||||| ||||||||||||||| ||||||| |||| | |||||||||||||||||    
T  4409619 atatgtttttagtc-ctacaaaatcacaagtttttaagtttaatccctataaaatatcaatggtaattttagtcc 4409546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 10993053 - 10992955
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||| ||||||| ||| |||||| ||||| ||||| |||| || ||||| ||| ||| |||||||| ||||||||||||||||| ||||||| |||||    
T  10993053 gtcaatattatttgtgagagtgattgtttgaaagcagttgacctgattatggatagtcgtgatcataccttgcacacttatgctactgacatctttcat 10992955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 355 - 409
Target Start/End: Complemental strand, 17141932 - 17141878
Alignment:
Q  355 aaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  17141932 aaatcataagtttttaagtttagtcgatataaaattttaatggtaattttagtcc 17141878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 617
Target Start/End: Original strand, 2443246 - 2443343
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacat 617  Q
    ||||| || |||||||||| ||| | |||| ||||||||||| ||||  | ||||||||||||| |||||||| ||||||||| ||||||| ||||||    
T  2443246 ggctatgtgaacattatttgtgagaatgattgtttggaagcagttgacttgattattgatggtcgtgatcataccttgcacacatatgctactgacat 2443343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 17957026 - 17957106
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||| ||||||| ||| | ||| || |||||||||||||||| || || |||||||||| |||||||||||||    
T  17957026 agttaaatatgtttttagtccctatataattatgagtttttaagtttagttccaataaaattttaattgtaattttagtcc 17957106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 6197808 - 6197886
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| ||| ||||||| || |||| ||||||||||| ||| ||||||||||||||| ||||||||    
T  6197808 gttaaatatgtttttagtccctataaaatcacaa-ttttcaagtttagtccatataaaattttaatggtaaatttagtcc 6197886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 527 - 624
Target Start/End: Original strand, 29047190 - 29047284
Alignment:
Q  527 tcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||||||||||||| |||||| ||   |||| ||  ||| |||||||| |||||||| |||||||| |||||||| | |||||||||||    
T  29047190 tcaacattatttatgaaagtgattgtttggcag---ttgacctgcttactgatggtcgtgatcataccttgcacatttatgctactaacatccttcat 29047284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 582 - 624
Target Start/End: Original strand, 6862592 - 6862634
Alignment:
Q  582 tcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  6862592 tcatgatcatagtttacacacttatgctattgacatccttcat 6862634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 10311636 - 10311713
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||||||| || ||||  || |||||||  |||||| || |||||| ||||| |||||||||||||||||||||||    
T  10311636 ttaaatatgttttaagtccttataaaatcacgagttttcaaatttagttcctataaaattttaatggtaattttagtc 10311713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 404
Target Start/End: Complemental strand, 32003194 - 32003156
Alignment:
Q  366 ttttaagtttagtccctatcaaattttaatggtaatttt 404  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  32003194 ttttaagtttagtccttattaaattttaatggtaatttt 32003156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 34187722 - 34187672
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtc 379  Q
    |||||||||||| ||||||| ||||||||| | || |||||||||||||||    
T  34187722 agttaaatatgtttttagtccctacaaaattacaaatttttaagtttagtc 34187672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 14896834 - 14896875
Alignment:
Q  366 ttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||    
T  14896834 ttttaagtttagttcctataaaattttaatgataattttagt 14896875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 50919449 - 50919373
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||||||| |||||||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||    
T  50919449 ttaaatatgtttttagtccttacaaaatcataaatttt-aagtttagtccctataaaattttaatggtaattttagtc 50919373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 624
Target Start/End: Original strand, 11075781 - 11075885
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatcc 619  Q
    ||||| ||||||||||||| ||| |||||| ||||||||||| ||||  | ||||||| | ||| |||||||| ||||||||||||||||| | ||||||    
T  11075781 ggctatgtcaacattatttgtgagagtgattgtttggaagcagttgacttgattattgcttgtcgtgatcataccttgcacacttatgctactaacatcc 11075880  T
Q  620 ttcat 624  Q
    |||||    
T  11075881 ttcat 11075885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 335 - 409
Target Start/End: Complemental strand, 29307753 - 29307679
Alignment:
Q  335 atatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||| | ||||| |||||||||||| |||||||||||||||||||||| | |||||||| |||||||||||||    
T  29307753 atatgtttctagtccctacaaaatcatgagtttttaagtttagtccctataagattttaattgtaattttagtcc 29307679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 527 - 624
Target Start/End: Original strand, 18565796 - 18565893
Alignment:
Q  527 tcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    |||||||||||| ||| |||||| ||||| ||| | |||| || ||||||||||||| |||| |||  ||||||||||||||||||||||| ||||||    
T  18565796 tcaacattatttgtgagagtgattgtttgaaagtagttgacctgattattgatggtcgtgattatacattgcacacttatgctattgacatacttcat 18565893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 33753130 - 33753055
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttag 406  Q
    ||||||||||| ||||||| ||||||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||||    
T  33753130 gttaaatatgtttttagtc-ctacaaaatcacaagttttaaagtttagtccgtataaaattttaatggtgattttag 33753055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 16824289 - 16824192
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||||| ||| |||| | ||||||||||| |||| || ||||||| |||||  |||||||  |||||||||||||||| |||||||||||||    
T  16824289 gtcaacattatttgtgagagtgtt-gtttggaagcagttgacctgattattgctggtcgagatcatactttgcacacttatgctactgacatccttcat 16824192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 20985945 - 20986003
Alignment:
Q  350 ctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||||||||  ||||||||| |||||||||||| |||||||||||||||||||||||    
T  20985945 ctacaaaatcacgagtttttaaatttagtccctataaaattttaatggtaattttagtc 20986003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 610
Target Start/End: Complemental strand, 39997685 - 39997603
Alignment:
Q  528 caacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgcta 610  Q
    ||||||||||||||| |||||| ||||| ||||| |||| || ||||||| ||||| |||||||| |||||| ||||||||||    
T  39997685 caacattatttatgagagtgattgtttgaaagcagttgacctgattattgctggtcgtgatcataccttgcaaacttatgcta 39997603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 624
Target Start/End: Original strand, 2887495 - 2887592
Alignment:
Q  526 gtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    |||||||||||||  || |||| | ||||||||||| |||| || ||||||| || || |||||||| ||||||||||||||||| || ||||||||||    
T  2887495 gtcaacattatttgcgagagtggttgtttggaagcagttgacctgattattgctgatcgtgatcata-cttgcacacttatgctactgtcatccttcat 2887592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 13392827 - 13392885
Alignment:
Q  350 ctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||||||||| |||||| ||||||||||||||| || |||||||| |||||||||||    
T  13392827 ctacaaaatcattagttttaaagtttagtccctataaagttttaatgttaattttagtc 13392885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 41667418 - 41667349
Alignment:
Q  325 atatagttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaa 394  Q
    |||||||||||||||| |||||| | ||||||||||| || |||||||||||||| |||| || ||||||    
T  41667418 atatagttaaatatgtttttagtttttacaaaatcatgagcttttaagtttagtctctattaacttttaa 41667349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 329 - 405
Target Start/End: Complemental strand, 16545581 - 16545505
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||||||||| |||| || |||||||||  | |||||||||||||| ||||||| ||||||||||| ||| ||||    
T  16545581 agttaaatatgtttttaatccctacaaaattttgagtttttaagtttaatccctataaaattttaatgataaattta 16545505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 14941151 - 14941101
Alignment:
Q  355 aaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||| ||||||||||||||||||  ||| ||||||||||||||||||||    
T  14941151 aaatcacaagtttttaagtttagtcgatataaaattttaatggtaatttta 14941101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 14951158 - 14951108
Alignment:
Q  355 aaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||| ||||||||||||||||||  ||| ||||||||||||||||||||    
T  14951158 aaatcacaagtttttaagtttagtcgatataaaattttaatggtaatttta 14951108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 14955399 - 14955349
Alignment:
Q  355 aaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||| ||||||||||||||||||  ||| ||||||||||||||||||||    
T  14955399 aaatcacaagtttttaagtttagtcgatataaaattttaatggtaatttta 14955349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 624
Target Start/End: Original strand, 9427665 - 9427761
Alignment:
Q  528 caacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||| ||| |||||| |||||||  || ||||  |  ||| |||||||| |||||||| |||||||| |||| ||| |||||||||||||    
T  9427665 caacattatttgtgagagtgattgtttggattcagttgacatgcttactgatggtcgtgatcataccttgcacatttatactactgacatccttcat 9427761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 3891463 - 3891522
Alignment:
Q  350 ctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| || | | |||||||||||||||| |||||||| ||||| |||||||||    
T  3891463 ctacaaaatcacaaatgtataagtttagtccctataaaattttattggtagttttagtcc 3891522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 35218056 - 35218131
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    ||||||||||| ||||||| ||||||||||| || ||||||| ||||||| ||   ||||||| || |||||||||    
T  35218056 gttaaatatgtttttagtccctacaaaatcacaattttttaaatttagtctctggaaaatttttatagtaatttta 35218131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 37471091 - 37471024
Alignment:
Q  342 tttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||| |||| ||||||  |||||| ||||||||||||||| ||| |||||||||  |||||||||    
T  37471091 tttagtccctaccaaatcaagagttttcaagtttagtccctataaaaatttaatggtgcttttagtcc 37471024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 15800838 - 15800884
Alignment:
Q  362 aagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    ||||||||||||||| ||||||| ||||||||||| | |||||||||    
T  15800838 aagtttttaagtttaatccctataaaattttaatgattattttagtc 15800884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 392
Target Start/End: Original strand, 23230793 - 23230855
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaatttt 392  Q
    ||||||||||| ||||||||||||||||| | || |||  ||||||||||||||  |||||||    
T  23230793 gttaaatatgtttttagtctctacaaaattacaaatttacaagtttagtccctacaaaatttt 23230855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 29102861 - 29102913
Alignment:
Q  357 atcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||| |||||| |||||||||||||||  ||||| |||| ||||||||||||    
T  29102861 atcatgagttttcaagtttagtccctatacaatttaaatgataattttagtcc 29102913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 19343548 - 19343628
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||| ||||||  |||||||||||| ||||||||||||||||| |||| |||||||| || ||||||||||||    
T  19343548 agttaaatatgtttttagtacctacaaaatcatgagtttttaagtttagtctctataaaattttagtgataattttagtcc 19343628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 26724110 - 26724186
Alignment:
Q  332 taaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    ||||||||| ||||||| |||||||||||  ||||||  |||||||||||||| |||||||||||||||||||||||    
T  26724110 taaatatgtttttagtccctacaaaatcacgagttttcgagtttagtccctataaaattttaatggtaattttagtc 26724186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 39058628 - 39058549
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||| || ||| ||||||| |||||||||||||||  |||||| ||||||||||||||||||||||||    
T  39058628 gttaaatatgtttttaatccctataaaatcacaagtttttaagtttaacccctataaaattttaatggtaattttagtcc 39058549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 5459048 - 5459101
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtcccta 383  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  5459048 gttaaatatgtttttagtctctataaaattataagtttttaagtttagtcccta 5459101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 332 - 405
Target Start/End: Complemental strand, 14820584 - 14820511
Alignment:
Q  332 taaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    ||||||||| ||||||  ||| ||||||||||||||| ||||||||||| ||  |||||||| |||||||||||    
T  14820584 taaatatgtttttagttcctataaaatcataagttttcaagtttagtccttacaaaattttagtggtaatttta 14820511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 15069928 - 15069996
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggt 398  Q
    ||||||||||| ||||  | |||||||||||| |||||||| ||||||||||| | |||||||||||||    
T  15069928 gttaaatatgtttttatgccctacaaaatcatgagtttttatgtttagtccctgtaaaattttaatggt 15069996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 529 - 624
Target Start/End: Complemental strand, 12292122 - 12292027
Alignment:
Q  529 aacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    |||||||||| ||| |||||| | ||||||||| |||| || ||||||| ||| | |||||||   |||||||||||||||| ||| |||||||||    
T  12292122 aacattatttgtgagagtgattgcttggaagcagttgagctgattattgttggccgtgatcatgcattgcacacttatgctagtgagatccttcat 12292027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 21114566 - 21114645
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| |||||| |||| ||||||| ||  |||||||||||||  |||  ||||||||||| ||||||||||||    
T  21114566 gttaaatatgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaattttaatgataattttagtcc 21114645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 38948520 - 38948599
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||||   || |||||||||||||| ||||||| || |||||||  ||| ||||||||||| ||||||||||||    
T  38948520 gttaaatatgttcctaatctctacaaaatcacaagttttcaaatttagtctatataaaattttaatgataattttagtcc 38948599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 2160372 - 2160422
Alignment:
Q  355 aaatcataagtttttaagtttagtccctatcaaattttaatggtaatttta 405  Q
    |||||| ||||||||||||||||||  ||| ||||||||||||||||||||    
T  2160372 aaatcacaagtttttaagtttagtcgatataaaattttaatggtaatttta 2160422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 392
Target Start/End: Complemental strand, 6502433 - 6502368
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagt--ttagtccctatcaaatttt 392  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||  ||||||| ||| |||||||    
T  6502433 agttaaatatgtttttagtctctacaaaataacaagtttttaagttattagtccttataaaatttt 6502368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 16089715 - 16089761
Alignment:
Q  363 agtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||    
T  16089715 agtttttaagtttagtcccaataaaattttaattgtaattttagtcc 16089761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 22976058 - 22976140
Alignment:
Q  174 gtgtactgtttgagcgtatacaaagtaagcgttaatatgcttccgggaaatttcgtatagaaaacacccgtactcaatagcaa 256  Q
    |||||||||||||| | ||  | ||||||| |||||| |||| || ||||||||||||| ||||||||||||||  |||||||    
T  22976058 gtgtactgtttgagggcatggagagtaagcattaataggctttcgtgaaatttcgtataaaaaacacccgtactatatagcaa 22976140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 3137151 - 3137200
Alignment:
Q  355 aaatcataagtttttaagtttagtccctatcaaattttaatggtaatttt 404  Q
    |||||| ||||||||||||||||||  ||| |||||||||||||||||||    
T  3137151 aaatcacaagtttttaagtttagtcaatataaaattttaatggtaatttt 3137200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 3746672 - 3746748
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||||||| ||||||| | ||||||| |  ||||||||| |||||| ||||| ||||||||||| |||||||||||    
T  3746672 ttaaatatgtttttagtccc-acaaaattacgagtttttaaatttagttcctataaaattttaatgctaattttagtc 3746748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 409
Target Start/End: Complemental strand, 5459268 - 5459229
Alignment:
Q  370 aagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  5459268 aagtttagtccctataaaattttaatggtaaatttagtcc 5459229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 26724371 - 26724316
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctat 384  Q
    |||| |||||| |||||||| ||||||||| | |||||||||||||||| ||||||    
T  26724371 agtttaatatgaatttagtccctacaaaattacaagtttttaagtttagcccctat 26724316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 2299247 - 2299324
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    ||||||||||| |||||||  |||||| ||| || ||||| ||||||||   ||| |||||||||||||||||||||||    
T  2299247 gttaaatatgtgtttagtccttacaaagtcacaaattttttagtttagttt-tataaaattttaatggtaattttagtc 2299324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 4294815 - 4294857
Alignment:
Q  351 tacaaaatcataagtttttaagtttagtccctatcaaatttta 393  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||    
T  4294815 tacaaaatcataaatttttaagtttagtccttataaaatttta 4294857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 38607326 - 38607372
Alignment:
Q  363 agtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||||||||  |||| |||||||||| |||||||||||||    
T  38607326 agtttttaagtttagtttctataaaattttaattgtaattttagtcc 38607372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 38948780 - 38948731
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtc 379  Q
    ||||||||||| |||||| |||||||||| | ||||||| ||||||||||    
T  38948780 gttaaatatgtttttagtttctacaaaattacaagttttcaagtttagtc 38948731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 1298951 - 1298899
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtcccta 383  Q
    |||||||||| ||||||| ||||||||| | ||| |||||| |||||||||||    
T  1298951 ttaaatatgtttttagtccctacaaaattacaagcttttaaatttagtcccta 1298899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 624
Target Start/End: Complemental strand, 12291974 - 12291878
Alignment:
Q  528 caacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatccttcat 624  Q
    ||||||||||| ||| |||||| | ||||||||| |||| || ||||| | ||| | |||||||   ||||||||||||||||  || |||||||||    
T  12291974 caacattatttgtgagagtgattgcttggaagcagttgagctgattatcgttggccgtgatcatgcattgcacacttatgctagcgagatccttcat 12291878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 36235751 - 36235827
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttag 406  Q
    |||||||||||  ||||||| | |||||| || |||||| || |||| | ||||| ||||||||| |||||||||||    
T  36235751 gttaaatatgttcttagtctatgcaaaattatgagttttcaaatttaattcctataaaattttaagggtaattttag 36235827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 5636 - 5557
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| |||||||||||| |||||||||| || |||||||| ||||||||||||||  ||||||||    
T  5636 gttaaatatgtttttagtccctacaaaatcatgagtttttaagcttggtccctatgaaattttaatggtatatttagtcc 5557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1911 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 1 - 57
Alignment:
Q  353 caaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||    
T  1 caaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcc 57  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 17094 - 17015
Alignment:
Q  330 gttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||||||||| ||||||| ||| |||||||  |||||| | ||||| ||||||| ||||||||||||||||||||||||    
T  17094 gttaaatatgtttttagtccctataaaatcacgagttttcaggtttaatccctataaaattttaatggtaattttagtcc 17015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 624
Target Start/End: Complemental strand, 54953 - 54849
Alignment:
Q  520 ggctaggtcaacattatttatgaaagtgatagtttggaagcaattgatcttattattgatggtcatgatcatagcttgcacacttatgctattgacatcc 619  Q
    ||||| || |||||||||| ||| |||||| ||||||||| |  ||| || ||||||||||||| |||||||| |||||||| ||||| |  ||||||||    
T  54953 ggctatgtgaacattatttgtgagagtgattgtttggaagtaggtgacctgattattgatggtcgtgatcataccttgcacatttatgttgctgacatcc 54854  T
Q  620 ttcat 624  Q
    |||||    
T  54853 ttcat 54849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 408
Target Start/End: Complemental strand, 19877 - 19819
Alignment:
Q  350 ctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtc 408  Q
    |||||||||||| | |||||| ||||||||||||| ||||||||| |||||||||||||    
T  19877 ctacaaaatcatgaatttttatgtttagtccctataaaattttaacggtaattttagtc 19819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 7809 - 7878
Alignment:
Q  325 atatagttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaa 394  Q
    |||||||||||||||| |||||| | ||||||||||| || |||||||||||||| |||| || ||||||    
T  7809 atatagttaaatatgtttttagtttttacaaaatcatgagcttttaagtttagtctctattaacttttaa 7878  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 48331 - 48386
Alignment:
Q  329 agttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctat 384  Q
    |||||||||||||||||||| ||||||||| | ||||||| |||||||||| ||||    
T  48331 agttaaatatgtatttagtccctacaaaattacaagttttcaagtttagtcactat 48386  T

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Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 409
Target Start/End: Complemental strand, 152340 - 152262
Alignment:
Q  331 ttaaatatgtatttagtctctacaaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    |||||||||| | ||||| ||| ||||| || | |||| ||||||||||  ||| ||||||||||||||||||||||||    
T  152340 ttaaatatgtttgtagtccctataaaattatgaattttcaagtttagtctttataaaattttaatggtaattttagtcc 152262  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 253892 - 253837
Alignment:
Q  354 aaaatcataagtttttaagtttagtccctatcaaattttaatggtaattttagtcc 409  Q
    ||||| || |||||||||||||||| | ||| |||||||||| |||||||||||||    
T  253892 aaaattatgagtttttaagtttagttcatataaaattttaatagtaattttagtcc 253837  T

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Target: scaffold0005; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 33600 - 33559
Alignment:
Q  366 ttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||    
T  33600 ttttaagtttagttcctataaaattttaatgataattttagt 33559  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 363207 - 363166
Alignment:
Q  366 ttttaagtttagtccctatcaaattttaatggtaattttagt 407  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||    
T  363207 ttttaagtttagttcctataaaattttaatgataattttagt 363166  T

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