View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7597_low_5 (Length: 419)
Name: NF7597_low_5
Description: NF7597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7597_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 1771631 - 1771249
Alignment:
| Q |
19 |
gattctgatcacatggtcatgttctctaaaccaaagaagcttagttccacccttctaaagattgcacaaaagtattaatccttaattttaatgtaatagt |
118 |
Q |
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| T |
1771631 |
gattctgatcacatggtcatgttgtctaaaccaaagaagcttagttccacccttctaaagattgtacaaaagtattaatccttaattttaatgtaatagt |
1771532 |
T |
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| Q |
119 |
atatggtatttgtgcctatcacgtcccaaaaacaaaagaatatgggctggacttatatttcaattatgaataaatggagttatctgttgtttttacttca |
218 |
Q |
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| T |
1771531 |
atatggtatttgtgcatatcacgtcccaaaaacaaaagaataggggctggacttatatttcaattatgaataaatggagttatctgttgtttttacttca |
1771432 |
T |
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| Q |
219 |
ttcttttgtttcaacattaaggtgtttgttattcctctatttgatgtatagttgataatataatcatgtagtgtaattgtttcttaaatgttcttaactt |
318 |
Q |
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| T |
1771431 |
ttcttttgtttcaacattaaggtgtttgttattcctctatttgatgtatagttgataatataatcatgtagtgtaattgtttcttaaatgttcttaactt |
1771332 |
T |
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| Q |
319 |
tcacaatctagtccttgcaccgcctccttgctcttctagggtttgttagggttttggtgtatagggttttatataatcagttt |
401 |
Q |
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| T |
1771331 |
tcacaatctagtccttgcaccgcctccttgctcttctagggtttgttagggttttggtgtatagggttttatataatcagttt |
1771249 |
T |
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