View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7597_low_8 (Length: 334)
Name: NF7597_low_8
Description: NF7597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7597_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 13261984 - 13262283
Alignment:
| Q |
13 |
aatatcatgcattaccttagtaataaacccttgcacgaactgtgtcattgtactatccacctcagatttttccgctggcttcatcaactcagccaccaca |
112 |
Q |
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| T |
13261984 |
aatatcgtgcattaccttagtaataaacccttgcacaaactgtgtcattgtactatccacctcagatttttccgctggcttcatcaactcagccaccaca |
13262083 |
T |
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| Q |
113 |
atcggctgaattggaaccgtggaagaatcagcttccattctcctaaacacaatcactaacatctgaatcaacgatgctttcgccgtcgtttgattcacca |
212 |
Q |
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| T |
13262084 |
atcggctgaattggaaccgtggaagaatcagcttccattctcctaaacacaatcactaacatctgaatcaacgatgctttcgcggtcgtttgattcacca |
13262183 |
T |
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| Q |
213 |
tattcttactcacaagatatatatcataacaagtcctaactatcaaaagcaaacaatcaccgtgaattcgaagcgaaatcgaagtcacagcagataacaa |
312 |
Q |
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| T |
13262184 |
tattcttactcacaagatatatatcataacaagtcctaactatcaaaagcaaacaatcaccgtgaattcgaagcgaaatcgaagtcacagcagataacaa |
13262283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 35 - 309
Target Start/End: Complemental strand, 28134122 - 28133848
Alignment:
| Q |
35 |
ataaacccttgcacgaactgtgtcattgtactatccacctcagatttttccgctggcttcatcaactcagccaccacaatcggctgaattggaaccgtgg |
134 |
Q |
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| T |
28134122 |
ataaaaccttgcacaaacactgtcatagagctatcaacatcagatttctccactggatccatcaattccgccaccacaatcggctgaatcggaacagtcg |
28134023 |
T |
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| Q |
135 |
aagaatcagcttccattctcctaaacacaatcactaacatctgaatcaacgatgctttcgccgtcgtttgattcaccatattcttactcacaagatatat |
234 |
Q |
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| T |
28134022 |
aagaatccgcctccattctcctaaaaacaatcactaacatctgaatcaacgacgctttcgcagtagtttgattcaccacattcttacttcctaaatagat |
28133923 |
T |
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| Q |
235 |
atcataacaagtcctaactatcaaaagcaaacaatcaccgtgaattcgaagcgaaatcgaagtcacagcagataa |
309 |
Q |
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| T |
28133922 |
atcataacaagtcctcacaatcaaaagcaaacaatcaccgtgaatccgaagtgaaatcgaagttaccgcagataa |
28133848 |
T |
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