View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7598_low_1 (Length: 564)
Name: NF7598_low_1
Description: NF7598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7598_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Complemental strand, 38126706 - 38126188
Alignment:
| Q |
17 |
atatcattcaaagaaaaaagcagaacctatatataaccaaataattaaacaatcagtgtcaaatgcattccaactaataaggcatgcatatatttaataa |
116 |
Q |
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| T |
38126706 |
atatcattcaaagaaaaaagcagaacctatatataaccaaataattaaacaatcagtgtcaaatgcattccaactaataaggcatgcatatatttaataa |
38126607 |
T |
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| Q |
117 |
atatttctcaaaaatatggagaaataaaacttaaggaatgtgcattaaaataagtgaactaatcctacatgttataggtttgatctgaggaccatgtata |
216 |
Q |
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| T |
38126606 |
atatttctcaaaaatatggagaaataaga--------------attaaaataagtgaactaatcctacatgttataggtttgatctaaggaccatgtata |
38126521 |
T |
|
| Q |
217 |
cagtagaaaacttgcaaaataagcaacatatgtcaatctatatttctgtttgtctaaacttctacttctagtttatatgaagatattgtcatatatgtca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38126520 |
cagtagaaaacttgcaaaataagcaacatatgtcaatctatatttctgtttgtctaaacttctacttctagtttatatgaagatattgtcatatatgtca |
38126421 |
T |
|
| Q |
317 |
gttttcctgatctatatctacatagagacctatgaagtaatccctagtaataaatcctgcagttgatatttcctttgccaaccctcaaattgaaccagac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38126420 |
gttttcctgatctatatctacatagagacctatgaagtaatccctagtaataaatcctgcagttgatatttcctttgccaaccctcaaattgaaccagac |
38126321 |
T |
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| Q |
417 |
tgcactttacactgctttcttgaagctgtcaacatacatagtgatatataaaatcaaccataaataagttaaaaggattttatgtctaatagtaacaagc |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
38126320 |
tgcactttacactgctttcttgaagctgtcaacatacatagtg----ataaaatcaaccataaataaattaaaaggattttatgtctaatagtaataagc |
38126225 |
T |
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| Q |
517 |
attacaagcaatgaatacaaacaataatgaccagtat |
553 |
Q |
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| T |
38126224 |
attacaagcaatgaatacagacaataatgactagtat |
38126188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 39708616 - 39708558
Alignment:
| Q |
110 |
ttaataaatatttctcaaaaa-tatggagaaataaaacttaaggaatgtgcattaaaat |
167 |
Q |
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|||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
39708616 |
ttaataaacatttctgaaaaaatatggagaaataagacttaaggaatgtgcattaaaat |
39708558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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