View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7598_low_2 (Length: 341)
Name: NF7598_low_2
Description: NF7598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7598_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 37532711 - 37533034
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532711 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
37532810 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37532811 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagccaaattgagaacattcaggtaacttgcat |
37532910 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37532911 |
tgcagaatgttgaagaaatatctcctgtgaagttgttatttgagagtgaaaagtatccaatgccatcaggtggaattggaagatctccttgtaacttgtt |
37533010 |
T |
|
| Q |
301 |
gaaactcaagtcaatgtacgaaat |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37533011 |
gaaactcaagtcaatgtacgaaat |
37533034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 37593815 - 37594115
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593815 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
37593914 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37593915 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacattcaggtaacttgcat |
37594014 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| || ||| || ||||||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
37594015 |
tgcagaatgttgaagatatatctcctgtgaaattgttgtttgagagtaaatagtttttaatgccatcaggtggaattggaagatctccttgaaagttgtt |
37594114 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
37594115 |
g |
37594115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 37696206 - 37696506
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37696206 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
37696305 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37696306 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacattcaggtaacttgcat |
37696405 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| || ||| || ||||||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
37696406 |
tgcagaatgttgaagatatatctcctgtgaaattgttgtttgagagtaaatagtttttaatgccatcaggtggaattggaagatctccttgaaaattgtt |
37696505 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
37696506 |
g |
37696506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 37823515 - 37823820
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37823515 |
taatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgc |
37823614 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | | ||| |||| |||| |
|
|
| T |
37823615 |
atatccaatacatgaagagaatttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagccaaatcgagcatataaagggaactggcat |
37823714 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823715 |
tgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
37823814 |
T |
|
| Q |
301 |
gaaact |
306 |
Q |
| |
|
|||||| |
|
|
| T |
37823815 |
gaaact |
37823820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 37401547 - 37401247
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37401547 |
taatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgc |
37401448 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| |||| |||| |
|
|
| T |
37401447 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagccaaatcgagcacataaagggaactggcat |
37401348 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
37401347 |
tgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgaaagttgtt |
37401248 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
37401247 |
g |
37401247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 37639357 - 37639657
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37639357 |
taatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatgcttccatagaggttgttcatttgc |
37639456 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | | ||| |||| |||| |
|
|
| T |
37639457 |
atatccaatacagtaagagaagttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagccaaatcgagcatataaagggaactggcat |
37639556 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
37639557 |
tgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtatttaatgccagaaggtggaattggaagatctccttgaaagttgtt |
37639656 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
37639657 |
g |
37639657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 37711115 - 37711415
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37711115 |
taatgatccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgc |
37711214 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||| |||| ||| || |||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||| ||| ||| |||| |||| |
|
|
| T |
37711215 |
atatccaaaacatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcacataaagggaactggcat |
37711314 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
37711315 |
tgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgaaagttgtt |
37711414 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
37711415 |
g |
37711415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 37393426 - 37393110
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
37393426 |
taatggtccttccaattggtttccattcaattttatagtctcaaatatatttcctttggaaaaggttccaggaatgcttccacagaggttgttcatttgc |
37393327 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||| | | ||| ||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||| | | ||| |||| |||| |
|
|
| T |
37393326 |
atatccaaaatagagagataagaaaatgttcctagacattgtggaatcatacctgtcaaattgttgtgagccaaattgaggatataaagggaactagcat |
37393227 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || ||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
37393226 |
tgcagaatgttgaagaaatatctcctgtgaagttgttgtttgagagtaaaaagtcttcaatgccatcaggtggaattggaagatcaccttgtaacttgtt |
37393127 |
T |
|
| Q |
301 |
gaaactcaagtcaatgt |
317 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
37393126 |
gaaactcaggtcaatgt |
37393110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 37702294 - 37702610
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37702294 |
taatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatgcttccatagaggttgttcatttgc |
37702393 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||| | | ||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
37702394 |
atatccaaaatagagagatgaggaaatgttcccagacattgtggaatcatacctgtcaaattgttgtgagccaaattgagaatgtaaagggaacttgcat |
37702493 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||||||||||||| |||||| | ||||||| ||||||||||||||||| |||||| ||| | || |
|
|
| T |
37702494 |
tgcagaatgttgaagagatatttcctgtgaagttgttgtttgagagtaaaaagtgtacaatgccatgaggtggaattggaagatgtccttgcaacatttt |
37702593 |
T |
|
| Q |
301 |
gaaactcaagtcaatgt |
317 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
37702594 |
gaaactcaggttaatgt |
37702610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 37382875 - 37382570
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37382875 |
taatggtccttccaatcggtttccattcaactttattgtctcaaatgcatttcctttggagaaggttctaggaatgtgtccatagaggttgttcatttgc |
37382776 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||||||||||||| || |||||||||||||||||||||||||| ||| ||||| ||||||| | |
|
|
| T |
37382775 |
atatccaataccgaaagagaaggaaatgttcccaagcattgtggaatcatgccagttaaattgttgtgagccaaattgagcacattcagggaacttgcgt |
37382676 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
|||| |||| || ||| | ||||||||| |||||||| |||||| ||||||| | ||||||| || |||| ||||||||||||||||| |||||||| |
|
|
| T |
37382675 |
tgcacaatgaaaaatcaatgtttcctgtgaagttgttgttcgagagtaaaaagtagtaaatgccataacgtgggattggaagatctccttgcaacttgtt |
37382576 |
T |
|
| Q |
301 |
gaaact |
306 |
Q |
| |
|
|||||| |
|
|
| T |
37382575 |
gaaact |
37382570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 161 - 324
Target Start/End: Original strand, 37594110 - 37594273
Alignment:
| Q |
161 |
ttgttgtgagccaaattgagaacactcaggtaacttgcattgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaa |
260 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
37594110 |
ttgttgtgagccaaattgagggtataaagggaacttgcattgcagaatgttgaagaaatatttcctgtgaagttgttatttgagagtgaaaagtattgaa |
37594209 |
T |
|
| Q |
261 |
tgccagaaggtggaattggaagatctccttgtaacttgttgaaactcaagtcaatgtacgaaat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37594210 |
tgccagaaggtggaattggaagatctccttgtaacttgttgaaactcaagtcaatgtacgaaat |
37594273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 37435321 - 37435638
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||| || |||||| || ||||||| ||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
37435321 |
taatggtccttctaattggttgccattcaactttatagtctcgaaggcatttcctctggaaaaagttttaggcatgcttccattaaggttgttcatttgc |
37435420 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||| || |||| ||| |||||||||||||||| |||||| || ||||| || |||||||| ||||||||||| || ||| | | ||||| | |
|
|
| T |
37435421 |
atatccaaaacggaaagaaaaggaaatgttcccaggcattttggaattatgcctgtcaatttgttgtgggccaaattgagcacgttcatggagcttgctt |
37435520 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
||| ||| |||||||||| ||||||| ||| |||||||||||||| ||||||||| ||||||| | ||||||||||| |||||||| || ||||| |
|
|
| T |
37435521 |
ggcacaattttgaagaaatgtctcctgcgaagttgttgtttgagagcaaaaagtattcaatgccatcggatggaattggaatgtctccttgcaatttgtt |
37435620 |
T |
|
| Q |
301 |
gaaactcaagtcaatgta |
318 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
37435621 |
gaaactgaggtcaatgta |
37435638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 161 - 306
Target Start/End: Complemental strand, 37401252 - 37401107
Alignment:
| Q |
161 |
ttgttgtgagccaaattgagaacactcaggtaacttgcattgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaa |
260 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||| || |
|
|
| T |
37401252 |
ttgttgtgagccaaattgagggtacgaagggaacttgcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattcaa |
37401153 |
T |
|
| Q |
261 |
tgccagaaggtggaattggaagatctccttgtaacttgttgaaact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401152 |
tgccagaaggtggaattggaagatctccttgtaacttgttgaaact |
37401107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 158 - 306
Target Start/End: Original strand, 37696498 - 37696646
Alignment:
| Q |
158 |
aaattgttgtgagccaaattgagaacactcaggtaacttgcattgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtatt |
257 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
37696498 |
aaattgttgtgagccaaattgagggtataaagggaacttgcattgcagaatgttgaagaaatatttcctgtgaagttgttgtttgagagtgaaaagtatc |
37696597 |
T |
|
| Q |
258 |
gaatgccagaaggtggaattggaagatctccttgtaacttgttgaaact |
306 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37696598 |
caatgctagaaggtggaattggaagatctccttgtaacttgttgaaact |
37696646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 37413714 - 37413547
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| ||| ||||| |||| ||||||||||||||||||||| | ||||||| | ||||||||||||| |
|
|
| T |
37413714 |
taatggtccttccaattgatttccgttcaactttatcatctcaaatgtatttcctttggaaaaggttctaggaaagcttccatacaagttgttcatttgc |
37413615 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtg |
168 |
Q |
| |
|
|||||||||| | |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37413614 |
atatccaatatagaaagagaaggaaatgttcctaggcattgtggaatcatgcctgttaaattgttgtg |
37413547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 161 - 319
Target Start/End: Original strand, 37711410 - 37711568
Alignment:
| Q |
161 |
ttgttgtgagccaaattgagaacactcaggtaacttgcattgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaa |
260 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||| |||| ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
37711410 |
ttgttgtgagccaaattgagggtataaagggaacttgcgttgcggaatgttgaagaaatatttcctgtgaagttgttatttgagagtgaaaagtattgaa |
37711509 |
T |
|
| Q |
261 |
tgccagaaggtggaattggaagatctccttgtaacttgttgaaactcaagtcaatgtac |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||||||||| | ||||||||| |
|
|
| T |
37711510 |
tgccagatggtggaattggaagatctccttgcaacatgttgaaactaagatcaatgtac |
37711568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 161 - 319
Target Start/End: Original strand, 37639652 - 37639810
Alignment:
| Q |
161 |
ttgttgtgagccaaattgagaacactcaggtaacttgcattgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaa |
260 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||| |||| ||||||||||||||||| ||||||||| ||||| ||||||||| |||||||| || |
|
|
| T |
37639652 |
ttgttgtgagccaaattgagggtataaagggaacttgcgttgcggaatgttgaagaaatatttcctgtgaagttgttatttgagagtaaaaagtatacaa |
37639751 |
T |
|
| Q |
261 |
tgccagaaggtggaattggaagatctccttgtaacttgttgaaactcaagtcaatgtac |
319 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||| |||||||||| | ||||||||| |
|
|
| T |
37639752 |
tgccatcaggtggaattggaagatgtccttgcaacatgttgaaactaagatcaatgtac |
37639810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 37428578 - 37428656
Alignment:
| Q |
228 |
tgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgttgaaact |
306 |
Q |
| |
|
|||| |||||||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37428578 |
tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaattggaagatctccttgcaacttgttgaaact |
37428656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 37413527 - 37413491
Alignment:
| Q |
270 |
gtggaattggaagatctccttgtaacttgttgaaact |
306 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37413527 |
gtggaattggaagatctccttgcaacttgttgaaact |
37413491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 16843545 - 16843245
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
16843545 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcatttcctttggaaaaggttttaggaatgcttccatagaggttgttcatttgc |
16843446 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || | | | ||| |||||||| |
|
|
| T |
16843445 |
atatccaatacattaagagaagttaatgttcctaggcattgtggaatcatacctgtcaaattgttgtgagccaaattaagcaaattaagggtacttgcat |
16843346 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
16843345 |
tgcagaatgttgaagaaatatctcctgtgaagttgttatttgagagtgaaaagtatacaatgccatcaggtggaattggaagatctccttgaaaattgtt |
16843246 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
16843245 |
g |
16843245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 16846213 - 16845893
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
16846213 |
taatggtccttccaattggttgccattcaactttatagtgacaaacacatttcctttggaaaaggttctaggaatgcttccaaagaggttgttcatttgc |
16846114 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaat----catacctgttaaattgttgtgagccaaattgagaacactcaggtaactt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
16846113 |
atatccaatacattaagagaagttaatgttcccaagcattgtggaatatatcatacatattaaattgttgtgagccaaattgagaacaatcaggaaactt |
16846014 |
T |
|
| Q |
197 |
gcattgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaact |
296 |
Q |
| |
|
||| |||||||||| ||||| |||||| ||||||| |||||||||||||| ||||||||| ||||||| || ||||||||||| |||||||| || | |
|
|
| T |
16846013 |
gcactgcagaatgtggaagacatatcttctgtgaagttgttgtttgagagcaaaaagtatttaatgccataatatggaattggaatgtctccttgcaatt |
16845914 |
T |
|
| Q |
297 |
tgttgaaactcaagtcaatgt |
317 |
Q |
| |
|
|||||||||| | |||||||| |
|
|
| T |
16845913 |
tgttgaaactgaggtcaatgt |
16845893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 24218280 - 24217975
Alignment:
| Q |
1 |
taatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgc |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||| ||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
24218280 |
taatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcatttgc |
24218181 |
T |
|
| Q |
101 |
atatccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcat |
200 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||||||||||||||| | |||||||||||||||| |||||||||||| | | ||||| ||||||||| |
|
|
| T |
24218180 |
atatccaatacagaaagataaggaaatgttcccaggcattgtggaatcgttcctgttaaattgttgttagccaaattgagcaaattcagggaacttgcat |
24218081 |
T |
|
| Q |
201 |
tgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgtt |
300 |
Q |
| |
|
|||| | || ||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||| ||||| |||||||| |||||||| |
|
|
| T |
24218080 |
tgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaaggtctccttgcaacttgtt |
24217981 |
T |
|
| Q |
301 |
gaaact |
306 |
Q |
| |
|
|||||| |
|
|
| T |
24217980 |
gaaact |
24217975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 158 - 324
Target Start/End: Complemental strand, 16843253 - 16843087
Alignment:
| Q |
158 |
aaattgttgtgagccaaattgagaacactcaggtaacttgcattgcagaatgttgaagaaatatctcctgtgaaattgttgtttgagagtgaaaagtatt |
257 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
16843253 |
aaattgttgtgagccaaattgagaacattcaagaaacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtttgagagcgaaaagtatt |
16843154 |
T |
|
| Q |
258 |
gaatgccagaaggtggaattggaagatctccttgtaacttgttgaaactcaagtcaatgtacgaaat |
324 |
Q |
| |
|
||| |||| ||| ||||||||||| |||||||| || ||||||||||| | ||||||||| |||| |
|
|
| T |
16843153 |
gaaggccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccaaat |
16843087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 14552986 - 14553189
Alignment:
| Q |
4 |
tggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgcata |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14552986 |
tggtcctttcaattggtttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcata |
14553085 |
T |
|
| Q |
104 |
tccaatacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacactcaggtaacttgcattgc |
203 |
Q |
| |
|
||||| | | ||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||| |||||||||||| |
|
|
| T |
14553086 |
tccaaaatagagagaagaggaaatgtccccaggcattgtggaatcatacctgtcaaattgttgtgagccaaattgagcatataaagggaacttgcattgc |
14553185 |
T |
|
| Q |
204 |
agaa |
207 |
Q |
| |
|
|||| |
|
|
| T |
14553186 |
agaa |
14553189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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