View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7599_1D_high_2 (Length: 618)

Name: NF7599_1D_high_2
Description: NF7599_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7599_1D_high_2
NF7599_1D_high_2
[»] chr6 (6 HSPs)
chr6 (11-252)||(10194993-10195241)
chr6 (340-554)||(10196055-10196276)
chr6 (187-252)||(30890184-30890249)
chr6 (259-318)||(10195675-10195734)
chr6 (261-319)||(1608089-1608147)
chr6 (261-319)||(4857022-4857080)
[»] chr5 (1 HSPs)
chr5 (261-319)||(9663123-9663181)
[»] chr2 (2 HSPs)
chr2 (261-319)||(36722005-36722063)
chr2 (261-318)||(20103351-20103408)
[»] chr8 (1 HSPs)
chr8 (291-319)||(16251652-16251680)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 3e-96; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 10194993 - 10195241
Alignment:
Q  11 gcttgaattcgggaaatttagaaattgagagaagccttatcgatatcgtgtgaaaaatattgacgattgtaagcaatatttatagtaaaagagtgcaaat 110  Q
    |||||||| | ||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10194993 gcttgaatgcaggaaattttaaaattgagagaagcattatcgatatcgtgtgaaaaatattgacaattgtaagcaatatttatagtaaaagagtgcaaat 10195092  T
Q  111 caaatgtgctgggcaatcacaatcaatggaatttggtaattattgacattgattga-------aattagtaattagtattgtaaatgaaaaaatgaaaca 203  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||| ||||||| ||||||||||||    
T  10195093 caaatgtgttgggcaatcacaatcaaaggaatttggtaattattgacattgattgaaattagtaattagtaattagtatcgtaaatggaaaaatgaaaca 10195192  T
Q  204 atcacaccaaaaattgggtcaattgtcattacattgattgctcactaaa 252  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10195193 atcacactaaaaattgggtcaattgtcattacattgattgctcactaaa 10195241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 340 - 554
Target Start/End: Original strand, 10196055 - 10196276
Alignment:
Q  340 agcaaaactgaaatgtttataatagagatagagattcataaatttatatatgagaataaaaatagacaccttgaatcagttgacagaatc-atgt----- 433  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |         
T  10196055 agcaaaattgaaatgtttataatagagatagagattcataaatttatatatgagaataaaaatagacaccttcagtcagttgacagaatcaatatataac 10196154  T
Q  434 -aaaagaaaaaatcaagtctaacacccttcttnnnnnnnnnnnngcaaacatctacgatgtttacgttcctaatgtattctctacaatttttatacaaat 532  Q
     || | |||||||||||||||||||| |||||            | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  10196155 aaacaaaaaaaatcaagtctaacaccgttcttaaaaataaaaaagtaaacatctatgatgtttacgttcctaatgcattctctacaatttttatacaaat 10196254  T
Q  533 aaatgaataatacaatccctac 554  Q
    ||||||||||||||||||||||    
T  10196255 aaatgaataatacaatccctac 10196276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 30890184 - 30890249
Alignment:
Q  187 aatgaaaaaatgaaacaatcacaccaaaaattgggtcaattgtcattacattgattgctcactaaa 252  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  30890184 aatgtaaaaatgaaacaatcacaccaaaaattgtgtcaattgtcattacattgattgcttactaaa 30890249  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 10195675 - 10195734
Alignment:
Q  259 acaaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaata 318  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||||    
T  10195675 acaaaacattaaatgctcctatgaacaaaaggttgccatgtgtactattaaaataaaata 10195734  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 1608089 - 1608147
Alignment:
Q  261 aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag 319  Q
    |||||||||||||| ||| | || | ||| ||| |||||||||||||||||||||||||    
T  1608089 aaaacattaaatgcaccttttaatataaggttgccacgtgtactatcaaaataaaatag 1608147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 4857022 - 4857080
Alignment:
Q  261 aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag 319  Q
    |||||||||||||| ||| | || | ||| ||| |||||||||||||||||||||||||    
T  4857022 aaaacattaaatgcacctttcaatataaggttgccacgtgtactatcaaaataaaatag 4857080  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 9663123 - 9663181
Alignment:
Q  261 aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag 319  Q
    |||||||||||||| ||| | || | ||| |||||||||||||||||||||||||||||    
T  9663123 aaaacattaaatgcaccttttaatataaggttgtcacgtgtactatcaaaataaaatag 9663181  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 36722063 - 36722005
Alignment:
Q  261 aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag 319  Q
    |||||||||||||| ||| | || | ||| |||||||||||||||||||||||||||||    
T  36722063 aaaacattaaatgcacctttcaatataaggttgtcacgtgtactatcaaaataaaatag 36722005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 20103408 - 20103351
Alignment:
Q  261 aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaata 318  Q
    |||||||||||||| ||| | || | ||| || |||||||||||||||||||||||||    
T  20103408 aaaacattaaatgcacctttcaatataagcttctcacgtgtactatcaaaataaaata 20103351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 319
Target Start/End: Complemental strand, 16251680 - 16251652
Alignment:
Q  291 ttgtcacgtgtactatcaaaataaaatag 319  Q
    |||||||||||||||||||||||||||||    
T  16251680 ttgtcacgtgtactatcaaaataaaatag 16251652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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