View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7599_1D_low_13 (Length: 243)
Name: NF7599_1D_low_13
Description: NF7599_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7599_1D_low_13 |
 | |
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| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0370 (1 HSPs) |
| | |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 6928398 - 6928604
Alignment:
| Q |
18 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactccggatggtgaagatgttattgattgtgaaccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
6928398 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactctggatggtgaagatgttattgattgtgaaccaat |
6928497 |
T |
|
| Q |
118 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6928498 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
6928597 |
T |
|
| Q |
218 |
ttcacag |
224 |
Q |
| |
|
||||||| |
|
|
| T |
6928598 |
ttcacag |
6928604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 503644 - 503850
Alignment:
| Q |
18 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactccggatggtgaagatgttattgattgtgaaccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
503644 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactctggatggtgaagatgttattgattgtgaaccaat |
503743 |
T |
|
| Q |
118 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
503744 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
503843 |
T |
|
| Q |
218 |
ttcacag |
224 |
Q |
| |
|
||||||| |
|
|
| T |
503844 |
ttcacag |
503850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 48721558 - 48721361
Alignment:
| Q |
27 |
tcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactccggatggtgaagatgttattgattgtgaaccaatattgggtta |
126 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48721558 |
tcaatatggggcctcaatacccatcaatgcatggtgttcttcgacttattgttactctggatggtgaagatgttattgattgtgaaccaatattgggtta |
48721459 |
T |
|
| Q |
127 |
tttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatgttcacag |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48721458 |
tttacacagaggtatggaaaaaattgcgaaaaatcaaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatgttcacag |
48721361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 52457465 - 52457361
Alignment:
| Q |
120 |
tgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatgtt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
52457465 |
tgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatatt |
52457366 |
T |
|
| Q |
220 |
cacag |
224 |
Q |
| |
|
||||| |
|
|
| T |
52457365 |
cacag |
52457361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 22838232 - 22838026
Alignment:
| Q |
18 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactccggatggtgaagatgttattgattgtgaaccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22838232 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactctggatggtgaagatgttattgattgtgaaccaat |
22838133 |
T |
|
| Q |
118 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22838132 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
22838033 |
T |
|
| Q |
218 |
ttcacag |
224 |
Q |
| |
|
||||||| |
|
|
| T |
22838032 |
ttcacag |
22838026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 14540141 - 14540347
Alignment:
| Q |
18 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactccggatggtgaagatgttattgattgtgaaccaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
14540141 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttaatctggatggtgaagatgttattgattgtgaaccaat |
14540240 |
T |
|
| Q |
118 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14540241 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
14540340 |
T |
|
| Q |
218 |
ttcacag |
224 |
Q |
| |
|
||||||| |
|
|
| T |
14540341 |
ttcacag |
14540347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 52932 - 52748
Alignment:
| Q |
18 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactccggatggtgaagatgttattgattgtgaaccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
52932 |
tcatgatagtcaatatggggcctcaacacccatcgatgaatggtgttcttcgacttattgttact----------------------attgtgaaccaat |
52855 |
T |
|
| Q |
118 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52854 |
attgggttattttgacagaggtatggaaaaaattgtggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
52755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 178960 - 178773
Alignment:
| Q |
18 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactccggatggtgaagatgttattgattgtgaaccaat |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
178960 |
tcatgatagtcaatatgggccctcaacacccatcaatgcatggtgttcttcgactgatcgttactcttgatggtgaggatgttattgattgtgaacccat |
178861 |
T |
|
| Q |
118 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattat |
205 |
Q |
| |
|
||| || |||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| | |||||||||||| | ||||||||| |
|
|
| T |
178860 |
attagggtatttacacagaggaatggaaaaaatcgcggaaaaccgaacgattatacaatacttaccttatgtaacaaggtgggattat |
178773 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 165451 - 165508
Alignment:
| Q |
167 |
attatacaatatctgccttatgtaacacgttgggattatttagctactatgttcacag |
224 |
Q |
| |
|
||||||||||| | |||||||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
165451 |
attatacaatacttaccttatgtaacaaggtgggattatttagctactatgtttacag |
165508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 20373770 - 20373586
Alignment:
| Q |
18 |
tcatgatagtcaatatggggcctcaacacccatcaatgcatggtgttcttagacttattgttactccggatggtgaagatgttattgattgtgaaccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
20373770 |
tcatgatagtcaatatggggcctcaacacccatcgatgaatggtgttcttcgacttattgttact----------------------attgtgaaccaat |
20373693 |
T |
|
| Q |
118 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20373692 |
attgggttattttgacagaggtatggaaaaaattgtggaaaatcgaacaattatacaatatctgccttatgaaacacgttgggattatttagctactatg |
20373593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 13591444 - 13591375
Alignment:
| Q |
154 |
ggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatgttcacag |
224 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13591444 |
ggaaaatcgaacaattatacaatatctaccttatataacacgtt-ggattatttagctactatgttcacag |
13591375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 97 - 1
Alignment:
| Q |
96 |
atgttattgattgtgaaccaatattgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaac |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
97 |
atgttattgattgtgaaccaatattgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaac |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 23765050 - 23765156
Alignment:
| Q |
118 |
attgggttatttacacagaggtatggaaaaaattgcggaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactatg |
217 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23765050 |
attgggttgtttacacaaagatatggaaaaaattgcgaaaaatcgaacaattatacaatatctgccttatgtaacacgttgggattatttagctactata |
23765149 |
T |
|
| Q |
218 |
ttcacag |
224 |
Q |
| |
|
||||||| |
|
|
| T |
23765150 |
ttcacag |
23765156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 14224 - 14176
Alignment:
| Q |
167 |
attatacaatatctgccttatgtaacacgttgggattatttagctacta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14224 |
attatacaatatctgccttatgtaacacattgggattatttagctacta |
14176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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