View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7599_1D_low_15 (Length: 227)
Name: NF7599_1D_low_15
Description: NF7599_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7599_1D_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 8403277 - 8403091
Alignment:
| Q |
19 |
aaaatgatgtatcctctaattaacaaaaaa--tgtcatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttca |
116 |
Q |
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| T |
8403277 |
aaaatgatgtatcccctaattaacaaaaaaaatgccatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttca |
8403178 |
T |
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| Q |
117 |
aacatagttctaaaatgataatgttgacgataaacattatattttgcctgcattgcaatttgagaattttaattcattattgagcaa |
203 |
Q |
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| T |
8403177 |
aacatagttctaaaatgataatgttgacgataaccattatcttttgcctccattgcaatttgagaattttaattcattattgagcaa |
8403091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 8429159 - 8428991
Alignment:
| Q |
19 |
aaaatgatgtatcctctaattaacaaaaaatgtcatattca----catgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggtt |
114 |
Q |
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||||| || ||||| |||||| || ||||||| |||||||| |||||||||||| |||||||||||||| | | ||||||||||||||| ||||||| |
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| T |
8429159 |
aaaatcatttatcccctaattgacgaaaaatgccatattcatatgcatgaatcttgggaatgttaatgagcataggagacaaatgaatagcgacatggtt |
8429060 |
T |
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| Q |
115 |
caaacatagttctaaaatgataatgttgacgataaacattatattttgcctgcattgcaatttgagaat |
183 |
Q |
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| T |
8429059 |
caaacatagttctaaaatgccaatctcgacattaaccattatcgtttgccaccattgcaatatgagaat |
8428991 |
T |
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