View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7599_1D_low_16 (Length: 223)

Name: NF7599_1D_low_16
Description: NF7599_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7599_1D_low_16
NF7599_1D_low_16
[»] chr4 (7 HSPs)
chr4 (7-211)||(49229233-49229434)
chr4 (7-75)||(21208641-21208709)
chr4 (7-78)||(21790108-21790179)
chr4 (19-70)||(31089895-31089947)
chr4 (36-73)||(43616241-43616278)
chr4 (19-75)||(29006840-29006896)
chr4 (19-75)||(54164892-54164948)
[»] chr7 (11 HSPs)
chr7 (7-73)||(47708408-47708474)
chr7 (7-75)||(47534975-47535043)
chr7 (7-72)||(47712487-47712552)
chr7 (22-73)||(3967712-3967763)
chr7 (7-73)||(2456343-2456409)
chr7 (19-75)||(3967784-3967840)
chr7 (22-75)||(34750410-34750464)
chr7 (21-74)||(44182528-44182580)
chr7 (21-73)||(3105953-3106005)
chr7 (19-57)||(45339541-45339579)
chr7 (21-74)||(35436307-35436360)
[»] chr1 (8 HSPs)
chr1 (7-73)||(748716-748782)
chr1 (7-73)||(15057664-15057730)
chr1 (21-75)||(20273201-20273255)
chr1 (19-73)||(39617315-39617369)
chr1 (17-69)||(5246218-5246270)
chr1 (31-67)||(42074224-42074260)
chr1 (19-75)||(42915725-42915781)
chr1 (19-75)||(52923402-52923458)
[»] chr2 (8 HSPs)
chr2 (19-75)||(44587722-44587778)
chr2 (7-49)||(2577742-2577784)
chr2 (1-73)||(19268067-19268139)
chr2 (19-75)||(44587648-44587704)
chr2 (22-73)||(40363226-40363277)
chr2 (21-71)||(38871453-38871503)
chr2 (19-75)||(2577679-2577736)
chr2 (7-75)||(25625915-25625983)
[»] chr6 (4 HSPs)
chr6 (21-75)||(3203676-3203730)
chr6 (32-67)||(3846444-3846479)
chr6 (21-74)||(3203752-3203805)
chr6 (19-72)||(33472694-33472747)
[»] chr8 (6 HSPs)
chr8 (19-71)||(12736364-12736416)
chr8 (21-67)||(27988092-27988138)
chr8 (21-67)||(28045394-28045440)
chr8 (17-75)||(10934608-10934666)
chr8 (36-74)||(17871859-17871897)
chr8 (19-75)||(13964424-13964480)
[»] chr3 (5 HSPs)
chr3 (19-75)||(50603592-50603648)
chr3 (32-75)||(36270081-36270124)
chr3 (19-75)||(34036551-34036607)
chr3 (19-74)||(39682615-39682670)
chr3 (21-67)||(26331231-26331277)
[»] chr5 (3 HSPs)
chr5 (36-75)||(7613363-7613402)
chr5 (19-75)||(13356216-13356272)
chr5 (19-75)||(42910791-42910847)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 49229233 - 49229434
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacccgacgaggaagtatgtcctatctttcaaacg 106  Q
    |||||||||| |||||| |||| ||||||||| ||| ||||||||| |||||| |||||| |||||||||||   ||||||||||||||||||||| |||    
T  49229233 atattaatgtttacatatatcattcattcaataaacctaaaaaattattttttacttatagtagtgacccga---ggaagtatgtcctatctttcatacg 49229329  T
Q  107 tactactagtatatgattttgacatgtcgtaccgtgtatggttctcccgtcacagttgaacgacataacgcaattgagttgattaaatggtttatgtctt 206  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49229330 tacgattagtatatgattttgacatgtcgtaccgtgtatggttctcccgtcacagttgaacgacataacgcaattgagttgattaaatggtttatgtctt 49229429  T
Q  207 attca 211  Q
    |||||    
T  49229430 attca 49229434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 21208641 - 21208709
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||  || |||||||||| ||||||||||| ||||||||  ||||||||||||||||||||||    
T  21208641 atattaatggttatatacatcacttattcaatgaacctaaaaaataattttttgcttataatagtgacc 21208709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 21790179 - 21790108
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacccga 78  Q
    ||||||||| | |||| ||||||||||||||| ||||||||||| | |||||| ||||||||| ||||||||    
T  21790179 atattaatgaccacattcatcactcattcaataaacttaaaaaaatatttttttcttataataatgacccga 21790108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 31089947 - 31089895
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattg-ttttttgcttataatag 70  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||||||||    
T  31089947 acatacatcactcattcaatgaacctaaaaaatagtttttttgcttataatag 31089895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 43616241 - 43616278
Alignment:
Q  36 aatgaacttaaaaaattgttttttgcttataatagtga 73  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  43616241 aatgaatttaaaaaattgatttttgcttataatagtga 43616278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 29006896 - 29006840
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||| | ||| ||||||  |||||||| | |||||||||||||||||||||    
T  29006896 acatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgacc 29006840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 54164892 - 54164948
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||| | ||| ||||||  |||||||| | |||||||||||||||||||||    
T  54164892 acatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgacc 54164948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 47708474 - 47708408
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtga 73  Q
    ||||||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  47708474 atattaatgacaacatacatcactcattcaatgaacttaaaaagtagttttttgcttataatagtga 47708408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 47535043 - 47534975
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    ||||||||| | | |||||||||||||| |||||||||||||| | |||||||||||||||||||||||    
T  47535043 atattaatgacaagatacatcactcatttaatgaacttaaaaagtagttttttgcttataatagtgacc 47534975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 47712552 - 47712487
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtg 72  Q
    ||||||||| | | ||| |||||||||||||||||||| |||||| ||||||||||||||||||||    
T  47712552 atattaatgacaagatatatcactcattcaatgaacttcaaaaatagttttttgcttataatagtg 47712487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 3967763 - 3967712
Alignment:
Q  22 tacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtga 73  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||||||    
T  3967763 tacatcactcattcaatgaacctaaaaagtagttttttgcttataatagtga 3967712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 2456409 - 2456343
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtga 73  Q
    ||||||||||| |||||||||| | ||||||||||| |||||| | | |||||||||||||||||||    
T  2456409 atattaatgtccacatacatcattaattcaatgaacctaaaaagtagatttttgcttataatagtga 2456343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 3967784 - 3967840
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||| | ||||||||||| |||||| | |||||||||||||||||||||||    
T  3967784 acatacatcatttattcaatgaacctaaaaagtagttttttgcttataatagtgacc 3967840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 34750410 - 34750464
Alignment:
Q  22 tacatcactcattcaatgaacttaaaaaattg-ttttttgcttataatagtgacc 75  Q
    ||||||||| |||||||||||||||||| | | ||||||||||||||||||||||    
T  34750410 tacatcacttattcaatgaacttaaaaagtagtttttttgcttataatagtgacc 34750464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 44182580 - 44182528
Alignment:
Q  21 atacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgac 74  Q
    |||||||| | |||||||||| | ||||||||||||||||||||||||||||||    
T  44182580 atacatcatttattcaatgaa-tcaaaaaattgttttttgcttataatagtgac 44182528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 3106005 - 3105953
Alignment:
Q  21 atacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtga 73  Q
    ||||| |||||||||||| ||| ||||||||  ||||||||||||||||||||    
T  3106005 atacaacactcattcaataaacctaaaaaataattttttgcttataatagtga 3105953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 45339541 - 45339579
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgtttt 57  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  45339541 acatacatcactcattgaatgaatttaaaaaattgtttt 45339579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 35436307 - 35436360
Alignment:
Q  21 atacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgac 74  Q
    |||||||| | ||||||||||| |||||| | ||||||| ||||||||||||||    
T  35436307 atacatcaattattcaatgaacctaaaaagtggttttttacttataatagtgac 35436360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 748716 - 748782
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtga 73  Q
    |||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  748716 atattaatggttacatacatcactcattcaatgaatctaaaaaattgttttttgcttataatagtga 748782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 15057730 - 15057664
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtga 73  Q
    ||||||||| | |||||||||||||||||||||||  |||||| | |||||||||||||||||||||    
T  15057730 atattaatgaccacatacatcactcattcaatgaatctaaaaagtagttttttgcttataatagtga 15057664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 20273201 - 20273255
Alignment:
Q  21 atacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||| | |||||||||| | ||||| ||||||||||||||||| |||||||    
T  20273201 atacatcatttattcaatgaattaaaaaagttgttttttgcttataacagtgacc 20273255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 39617369 - 39617315
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtga 73  Q
    |||||||||||||||||||| ||  |||||| | ||||||| |||||||||||||    
T  39617369 acatacatcactcattcaataaatctaaaaagtagttttttacttataatagtga 39617315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 5246218 - 5246270
Alignment:
Q  17 ctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataata 69  Q
    |||||||||||| | ||||||||||  |||||||| |||||||| ||||||||    
T  5246218 ctacatacatcatttattcaatgaatctaaaaaatagttttttgtttataata 5246270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 42074224 - 42074260
Alignment:
Q  31 cattcaatgaacttaaaaaattgttttttgcttataa 67  Q
    |||||||||||| |||||||| |||||||||||||||    
T  42074224 cattcaatgaacctaaaaaatagttttttgcttataa 42074260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 42915725 - 42915781
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    ||||| |||| | ||| |||||||||||||| |  ||||||||||||||||||||||    
T  42915725 acatatatcatttatttaatgaacttaaaaagtgtttttttgcttataatagtgacc 42915781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 52923402 - 52923458
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||| | ||| ||||||| |||||| | | |||||||||||||||||||||    
T  52923402 acatacatcatttattgaatgaacctaaaaagtagatttttgcttataatagtgacc 52923458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 44587722 - 44587778
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||||||||||||||||  |||||| | |||||||||||||||||||||||    
T  44587722 acatacatcactcattcaatgaatctaaaaagtagttttttgcttataatagtgacc 44587778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 2577742 - 2577784
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaa 49  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  2577742 atattaatggctacatacataactcattcaatgaacttaaaaa 2577784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19268139 - 19268067
Alignment:
Q  1 tcatcaatattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtga 73  Q
    ||||| |||||| || ||| |||||||| | ||| |||||||||||||| ||| ||||||||||||| |||||    
T  19268139 tcatctatattattgactaaatacatcatttattgaatgaacttaaaaagttgatttttgcttataacagtga 19268067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 44587704 - 44587648
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||| | ||||||||||| |||||||| || |||||||||||||| |||||    
T  44587704 acatacatcatttattcaatgaacctaaaaaatagtattttgcttataataatgacc 44587648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 40363277 - 40363226
Alignment:
Q  22 tacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtga 73  Q
    ||||||| | ||||||||||| |||||| | |||||||||||||||||||||    
T  40363277 tacatcatttattcaatgaacctaaaaagtagttttttgcttataatagtga 40363226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 38871503 - 38871453
Alignment:
Q  21 atacatcactcattcaatgaacttaaaaaattgttttttgcttataatagt 71  Q
    |||||||| | ||||||| || ||| |||||||||||||||||||||||||    
T  38871503 atacatcatttattcaataaatttagaaaattgttttttgcttataatagt 38871453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 2577736 - 2577679
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgtttttt-gcttataatagtgacc 75  Q
    |||||||||| || |||||||||| |||||||| ||||||| | ||||||||||||||    
T  2577736 acatacatcattcgttcaatgaacctaaaaaatagtttttttgtttataatagtgacc 2577679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 25625915 - 25625983
Alignment:
Q  7 atattaatgtctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    ||||||||| |||||||||  ||| ||||||| ||  ||||| |||||| |||| ||||||||||||||    
T  25625915 atattaatggctacatacacaacttattcaataaatctaaaagattgttgtttgtttataatagtgacc 25625983  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 3203730 - 3203676
Alignment:
Q  21 atacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||    
T  3203730 atacatcattcattgaatgaacctaaaaaattgatttttgcttataatagtgacc 3203676  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 3846479 - 3846444
Alignment:
Q  32 attcaatgaacttaaaaaattgttttttgcttataa 67  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3846479 attcaatgaacttaaaaaattattttttgcttataa 3846444  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 3203752 - 3203805
Alignment:
Q  21 atacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgac 74  Q
    |||||||| | ||| ||||||| |||||| ||| ||||||||||||||||||||    
T  3203752 atacatcatttattaaatgaacctaaaaagttgatttttgcttataatagtgac 3203805  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 33472747 - 33472694
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtg 72  Q
    |||||||||||||||| |||||| |||||||||   ||||| ||||||||||||    
T  33472747 acatacatcactcatttaatgaatttaaaaaatatgtttttacttataatagtg 33472694  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 12736416 - 12736364
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagt 71  Q
    |||||||||| ||||||||||||| |||||| | |||||||||||||||||||    
T  12736416 acatacatcaatcattcaatgaacctaaaaagtagttttttgcttataatagt 12736364  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 27988138 - 27988092
Alignment:
Q  21 atacatcactcattcaatgaacttaaaaaattgttttttgcttataa 67  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||||    
T  27988138 atacattacttattcaatgaacttaaaaagttgttttttgcttataa 27988092  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 28045440 - 28045394
Alignment:
Q  21 atacatcactcattcaatgaacttaaaaaattgttttttgcttataa 67  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||||    
T  28045440 atacattacttattcaatgaacttaaaaagttgttttttgcttataa 28045394  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 10934666 - 10934608
Alignment:
Q  17 ctacatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||||| | ||| ||||||  ||||| || |||||||||||||||||||||||    
T  10934666 ctacatacatcattaattaaatgaatgtaaaatatagttttttgcttataatagtgacc 10934608  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 17871859 - 17871897
Alignment:
Q  36 aatgaacttaaaaaattgttttttgcttataatagtgac 74  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  17871859 aatgaacctaaaaaattgatttttgcttataatagtgac 17871897  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 13964480 - 13964424
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||| | ||| |||||| ||||||  ||| |||||||||||||||||||||    
T  13964480 acatacatcatttattgaatgaatttaaaatgttgatttttgcttataatagtgacc 13964424  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 50603592 - 50603648
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||| | ||| |||||||||||||||| | |||||||||||||||||||||    
T  50603592 acatacatcatttattgaatgaacttaaaaaatagatttttgcttataatagtgacc 50603648  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 36270081 - 36270124
Alignment:
Q  32 attcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  36270081 attcaatgaacataaaaaatggttttttgcttataatagtgacc 36270124  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 34036607 - 34036551
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||||| |||||||||||||||||| |   |||||||||| ||||||||||    
T  34036607 acatacatcacttattcaatgaacttaaaaagtgcatttttgcttaaaatagtgacc 34036551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 39682670 - 39682615
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgac 74  Q
    |||||||||| | ||||||||||| ||||||||  |||||| ||||||||||||||    
T  39682670 acatacatcatttattcaatgaacctaaaaaataattttttacttataatagtgac 39682615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 26331277 - 26331231
Alignment:
Q  21 atacatcactcattcaatgaacttaaaaaattgttttttgcttataa 67  Q
    |||||| | ||||||||||||| || |||||||||||||||||||||    
T  26331277 atacattagtcattcaatgaacctagaaaattgttttttgcttataa 26331231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 7613402 - 7613363
Alignment:
Q  36 aatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  7613402 aatgaacttaaaaagttgatttttgcttataatagtgacc 7613363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 13356216 - 13356272
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||||||||| | ||| |||||||||||||| | | ||||||||||||||| |||||    
T  13356216 acatacatcatttattgaatgaacttaaaaagtagatttttgcttataataatgacc 13356272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 42910791 - 42910847
Alignment:
Q  19 acatacatcactcattcaatgaacttaaaaaattgttttttgcttataatagtgacc 75  Q
    |||| ||||||||||||||| ||| |||||| | || |||| |||||||||||||||    
T  42910791 acattcatcactcattcaataaacctaaaaagtagtattttacttataatagtgacc 42910847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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