View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7599_1D_low_17 (Length: 222)
Name: NF7599_1D_low_17
Description: NF7599_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7599_1D_low_17 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 40060956 - 40060739
Alignment:
| Q |
5 |
catatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtca |
104 |
Q |
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| T |
40060956 |
catatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtca |
40060857 |
T |
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| Q |
105 |
aagttggctcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctcttaaaaactggccttaagaacaataccatat |
204 |
Q |
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| T |
40060856 |
aagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctcttaaaaactggccttaagaacaataccatat |
40060757 |
T |
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| Q |
205 |
agtaaattgaacttgtga |
222 |
Q |
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|||||||||||||||||| |
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| T |
40060756 |
agtaaattgaacttgtga |
40060739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 40079055 - 40078911
Alignment:
| Q |
32 |
cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggctcctccatggtactgtttt |
131 |
Q |
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| T |
40079055 |
cataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccggtacttcggtcaaagttggttcctccatggtactgtttt |
40078956 |
T |
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| Q |
132 |
tgagcaggcaataaaaaatgatacagtatcaactaattcctctta |
176 |
Q |
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| T |
40078955 |
tgggcaagcaataaaaaatgataaagtattagctaattcctctta |
40078911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 40086828 - 40086684
Alignment:
| Q |
32 |
cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggctcctccatggtactgtttt |
131 |
Q |
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| T |
40086828 |
cataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttt |
40086729 |
T |
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| Q |
132 |
tgagcaggcaataaaaaatgatacagtatcaactaattcctctta |
176 |
Q |
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| T |
40086728 |
tagtcaagcaatgaaaaatgatacagtatcagctaattcctctta |
40086684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 22014420 - 22014530
Alignment:
| Q |
32 |
cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggctcctccatggtactgtttt |
131 |
Q |
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| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
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| Q |
132 |
tgagcaggcaa |
142 |
Q |
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| T |
22014520 |
agagcaagcaa |
22014530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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