View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7599_1D_low_2 (Length: 618)
Name: NF7599_1D_low_2
Description: NF7599_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7599_1D_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 3e-96; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 10194993 - 10195241
Alignment:
| Q |
11 |
gcttgaattcgggaaatttagaaattgagagaagccttatcgatatcgtgtgaaaaatattgacgattgtaagcaatatttatagtaaaagagtgcaaat |
110 |
Q |
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| T |
10194993 |
gcttgaatgcaggaaattttaaaattgagagaagcattatcgatatcgtgtgaaaaatattgacaattgtaagcaatatttatagtaaaagagtgcaaat |
10195092 |
T |
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| Q |
111 |
caaatgtgctgggcaatcacaatcaatggaatttggtaattattgacattgattga-------aattagtaattagtattgtaaatgaaaaaatgaaaca |
203 |
Q |
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| T |
10195093 |
caaatgtgttgggcaatcacaatcaaaggaatttggtaattattgacattgattgaaattagtaattagtaattagtatcgtaaatggaaaaatgaaaca |
10195192 |
T |
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| Q |
204 |
atcacaccaaaaattgggtcaattgtcattacattgattgctcactaaa |
252 |
Q |
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| T |
10195193 |
atcacactaaaaattgggtcaattgtcattacattgattgctcactaaa |
10195241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 340 - 554
Target Start/End: Original strand, 10196055 - 10196276
Alignment:
| Q |
340 |
agcaaaactgaaatgtttataatagagatagagattcataaatttatatatgagaataaaaatagacaccttgaatcagttgacagaatc-atgt----- |
433 |
Q |
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| T |
10196055 |
agcaaaattgaaatgtttataatagagatagagattcataaatttatatatgagaataaaaatagacaccttcagtcagttgacagaatcaatatataac |
10196154 |
T |
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| Q |
434 |
-aaaagaaaaaatcaagtctaacacccttcttnnnnnnnnnnnngcaaacatctacgatgtttacgttcctaatgtattctctacaatttttatacaaat |
532 |
Q |
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| T |
10196155 |
aaacaaaaaaaatcaagtctaacaccgttcttaaaaataaaaaagtaaacatctatgatgtttacgttcctaatgcattctctacaatttttatacaaat |
10196254 |
T |
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| Q |
533 |
aaatgaataatacaatccctac |
554 |
Q |
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| T |
10196255 |
aaatgaataatacaatccctac |
10196276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 30890184 - 30890249
Alignment:
| Q |
187 |
aatgaaaaaatgaaacaatcacaccaaaaattgggtcaattgtcattacattgattgctcactaaa |
252 |
Q |
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| T |
30890184 |
aatgtaaaaatgaaacaatcacaccaaaaattgtgtcaattgtcattacattgattgcttactaaa |
30890249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 10195675 - 10195734
Alignment:
| Q |
259 |
acaaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaata |
318 |
Q |
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| T |
10195675 |
acaaaacattaaatgctcctatgaacaaaaggttgccatgtgtactattaaaataaaata |
10195734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 1608089 - 1608147
Alignment:
| Q |
261 |
aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag |
319 |
Q |
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|||||||||||||| ||| | || | ||| ||| ||||||||||||||||||||||||| |
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| T |
1608089 |
aaaacattaaatgcaccttttaatataaggttgccacgtgtactatcaaaataaaatag |
1608147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 4857022 - 4857080
Alignment:
| Q |
261 |
aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag |
319 |
Q |
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| T |
4857022 |
aaaacattaaatgcacctttcaatataaggttgccacgtgtactatcaaaataaaatag |
4857080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 9663123 - 9663181
Alignment:
| Q |
261 |
aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag |
319 |
Q |
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| T |
9663123 |
aaaacattaaatgcaccttttaatataaggttgtcacgtgtactatcaaaataaaatag |
9663181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 36722063 - 36722005
Alignment:
| Q |
261 |
aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaatag |
319 |
Q |
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| T |
36722063 |
aaaacattaaatgcacctttcaatataaggttgtcacgtgtactatcaaaataaaatag |
36722005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 20103408 - 20103351
Alignment:
| Q |
261 |
aaaacattaaatgctcctatgaacaaaagattgtcacgtgtactatcaaaataaaata |
318 |
Q |
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|||||||||||||| ||| | || | ||| || ||||||||||||||||||||||||| |
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| T |
20103408 |
aaaacattaaatgcacctttcaatataagcttctcacgtgtactatcaaaataaaata |
20103351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 319
Target Start/End: Complemental strand, 16251680 - 16251652
Alignment:
| Q |
291 |
ttgtcacgtgtactatcaaaataaaatag |
319 |
Q |
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| T |
16251680 |
ttgtcacgtgtactatcaaaataaaatag |
16251652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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