View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7599_1D_low_20 (Length: 220)
Name: NF7599_1D_low_20
Description: NF7599_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7599_1D_low_20 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 24491863 - 24491696
Alignment:
| Q |
52 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24491863 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24491764 |
T |
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| Q |
152 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttctcgatcacaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24491763 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacaga |
24491696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 24495421 - 24495254
Alignment:
| Q |
52 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
151 |
Q |
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| T |
24495421 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24495322 |
T |
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| Q |
152 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttctcgatcacaga |
219 |
Q |
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| T |
24495321 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacaga |
24495254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 2810371 - 2810251
Alignment:
| Q |
100 |
tcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtga |
199 |
Q |
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| T |
2810371 |
tcacaaggtatattggtacaatatatagaaacatatttgttgtcctaataattgcttcctagagctatggtttgactttctctaatcaattacagtgtga |
2810272 |
T |
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| Q |
200 |
tattatttctcgatcacagaa |
220 |
Q |
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|||||||||| ||||||||| |
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| T |
2810271 |
tattatttcttaatcacagaa |
2810251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 24359176 - 24359009
Alignment:
| Q |
52 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24359176 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24359077 |
T |
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| Q |
152 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttctcgatcacaga |
219 |
Q |
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| T |
24359076 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacaga |
24359009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 86922 - 86754
Alignment:
| Q |
51 |
gtataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataa |
150 |
Q |
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| T |
86922 |
gtataaggaataatgatatataaggaataatgattttt-gctatatcattcacaaggtattttggcacaatatatagaaacatatttgctgtcctaataa |
86824 |
T |
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| Q |
151 |
ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttctcgatcacagaa |
220 |
Q |
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| T |
86823 |
ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaa |
86754 |
T |
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Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 18556573 - 18556740
Alignment:
| Q |
52 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
151 |
Q |
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| T |
18556573 |
tataaggaataatgatatgtatggaataatgatttt-tgctatatcattcacaaggtatattggtacaatatatagaaacatatttgctgtcctaataat |
18556671 |
T |
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| Q |
152 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttctcgatcacagaa |
220 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| |
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| T |
18556672 |
tgcttcctccagctatggtttgactttctctagtcaattatagtgtgatattatttcttgatcacagaa |
18556740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 22684924 - 22684890
Alignment:
| Q |
15 |
tatatgcatcacagatagcaatttggacaactgta |
49 |
Q |
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| T |
22684924 |
tatatgcatcacagatagcaatttggacaactgta |
22684890 |
T |
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