View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7599_1D_low_22 (Length: 218)

Name: NF7599_1D_low_22
Description: NF7599_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7599_1D_low_22
NF7599_1D_low_22
[»] chr4 (11 HSPs)
chr4 (15-206)||(28948426-28948610)
chr4 (15-207)||(22703070-22703255)
chr4 (15-207)||(22990862-22991047)
chr4 (20-142)||(22698733-22698848)
chr4 (20-142)||(22981682-22981797)
chr4 (20-142)||(22995269-22995384)
chr4 (63-146)||(56560508-56560591)
chr4 (63-146)||(24036214-24036297)
chr4 (62-146)||(16565539-16565623)
chr4 (62-146)||(15618844-15618928)
chr4 (67-112)||(52056997-52057042)
[»] scaffold0009 (1 HSPs)
scaffold0009 (15-207)||(200042-200227)
[»] chr8 (6 HSPs)
chr8 (20-142)||(19648194-19648309)
chr8 (63-146)||(193387-193470)
chr8 (63-146)||(720991-721074)
chr8 (63-146)||(882098-882181)
chr8 (63-146)||(30983223-30983306)
chr8 (63-146)||(44240122-44240205)
[»] chr1 (6 HSPs)
chr1 (20-142)||(4345989-4346104)
chr1 (63-146)||(46407488-46407571)
chr1 (63-146)||(50978939-50979022)
chr1 (63-139)||(35606336-35606412)
chr1 (62-146)||(35569906-35569990)
chr1 (64-104)||(50979027-50979067)
[»] chr5 (4 HSPs)
chr5 (20-142)||(22809984-22810099)
chr5 (63-146)||(33232457-33232540)
chr5 (63-146)||(7072032-7072115)
chr5 (62-146)||(22481515-22481599)
[»] chr3 (4 HSPs)
chr3 (24-142)||(7011653-7011764)
chr3 (63-146)||(51125383-51125466)
chr3 (63-146)||(52692542-52692625)
chr3 (62-119)||(16246819-16246876)
[»] chr2 (6 HSPs)
chr2 (20-142)||(23360942-23361058)
chr2 (63-146)||(13895999-13896082)
chr2 (63-146)||(14036616-14036699)
chr2 (63-146)||(14380107-14380190)
chr2 (62-146)||(5916944-5917028)
chr2 (62-146)||(36311597-36311681)
[»] chr6 (4 HSPs)
chr6 (63-146)||(21515703-21515786)
chr6 (63-146)||(30019220-30019303)
chr6 (62-146)||(16547456-16547540)
chr6 (61-139)||(17830767-17830845)
[»] chr7 (3 HSPs)
chr7 (61-146)||(37638703-37638788)
chr7 (61-146)||(10372714-10372799)
chr7 (62-107)||(12963342-12963387)
[»] scaffold0394 (1 HSPs)
scaffold0394 (68-139)||(6607-6678)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 28948426 - 28948610
Alignment:
Q  15 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28948426 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 28948518  T
Q  115 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgt 206  Q
     |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28948519 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgt 28948610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 22703070 - 22703255
Alignment:
Q  15 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22703070 gaacctgtgtcataattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgggcacctta 22703162  T
Q  115 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 207  Q
     |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703163 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 22703255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 22991047 - 22990862
Alignment:
Q  15 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||    
T  22991047 gaacctgtgtcataattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgggcacctta 22990955  T
Q  115 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 207  Q
     |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990954 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 22990862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 22698848 - 22698733
Alignment:
Q  20 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22698848 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 22698756  T
Q  120 aagtgataataattaaatacctc 142  Q
     ||||||||||||| ||||||||    
T  22698755 gagtgataataattgaatacctc 22698733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 22981682 - 22981797
Alignment:
Q  20 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 119  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22981682 tgtgtcttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 22981774  T
Q  120 aagtgataataattaaatacctc 142  Q
     ||||||||||||| ||||||||    
T  22981775 gagtgataataattgaatacctc 22981797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 22995269 - 22995384
Alignment:
Q  20 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 119  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22995269 tgtgtcttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 22995361  T
Q  120 aagtgataataattaaatacctc 142  Q
     ||||||||||||| ||||||||    
T  22995362 gagtgataataattgaatacctc 22995384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 56560591 - 56560508
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  56560591 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 56560508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 24036214 - 24036297
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  24036214 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 24036297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 16565623 - 16565539
Alignment:
Q  62 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| | ||| ||||||    
T  16565623 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgattacttcatta 16565539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 15618928 - 15618844
Alignment:
Q  62 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||| | || |||| ||||||| ||||| ||||| ||||||    
T  15618928 aattgcaaatctattcttccataccccaaaagttttttcaattgtgcatcctaaacttgagtgatagtaattgaatacttcatta 15618844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 52056997 - 52057042
Alignment:
Q  67 caaatctattcttccatacaccaaaagttctttctattgtgcacct 112  Q
    ||||||| ||||||||||| | ||||||| ||||||||||||||||    
T  52056997 caaatctgttcttccataccctaaaagttatttctattgtgcacct 52057042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 200042 - 200227
Alignment:
Q  15 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  200042 gaacctgtgtcataattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgggcacctta 200134  T
Q  115 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 207  Q
     |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  200135 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 200227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 19648309 - 19648194
Alignment:
Q  20 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19648309 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 19648217  T
Q  120 aagtgataataattaaatacctc 142  Q
     ||||||||||||| ||||||||    
T  19648216 gagtgataataattgaatacctc 19648194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 193470 - 193387
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  193470 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 193387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 721074 - 720991
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  721074 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 720991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 882181 - 882098
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  882181 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 882098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 30983223 - 30983306
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  30983223 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 30983306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 44240205 - 44240122
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||| | |||| |||| ||||||||||||||||||| ||||||    
T  44240205 attgcaaatatgttcttccataccccaaaagttctttctattgtgtatcttaaacttgagtgataataattaaatacttcatta 44240122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 4346104 - 4345989
Alignment:
Q  20 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4346104 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 4346012  T
Q  120 aagtgataataattaaatacctc 142  Q
     ||||||||||||| ||||||||    
T  4346011 gagtgataataattgaatacctc 4345989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 46407571 - 46407488
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  46407571 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 46407488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 50978939 - 50979022
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  50978939 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 50979022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 35606412 - 35606336
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 139  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  35606412 attgcaaatctgttcttccataccccaacagttctttctattgtgcaccttaaacttgagtgataataattaaatac 35606336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 35569906 - 35569990
Alignment:
Q  62 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  35569906 aattgcaaatttattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 35569990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 50979027 - 50979067
Alignment:
Q  64 ttgcaaatctattcttccatacaccaaaagttctttctatt 104  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  50979027 ttgcaaatctgttcttccataccccaaaagttctttctatt 50979067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 22810099 - 22809984
Alignment:
Q  20 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 119  Q
    |||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22810099 tgtgtcttaattgtgaatttagtcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 22810007  T
Q  120 aagtgataataattaaatacctc 142  Q
     ||||||||||||| ||||||||    
T  22810006 gagtgataataattgaatacctc 22809984  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 33232540 - 33232457
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  33232540 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 33232457  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7072032 - 7072115
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||||| ||||||    
T  7072032 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaatttgagtgataataattaaatacttcatta 7072115  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 22481599 - 22481515
Alignment:
Q  62 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  22481599 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 22481515  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 7011764 - 7011653
Alignment:
Q  24 tcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagt 123  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  7011764 tcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagt 7011672  T
Q  124 gataataattaaatacctc 142  Q
    |||||||||| ||||||||    
T  7011671 gataataattgaatacctc 7011653  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 51125383 - 51125466
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  51125383 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 51125466  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 52692625 - 52692542
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  52692625 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 52692542  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 16246819 - 16246876
Alignment:
Q  62 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 119  Q
    |||||||||||||||||||||| |   |||||||||||| |||||||| |||| ||||    
T  16246819 aattgcaaatctattcttccatgccttaaaagttctttcaattgtgcatcttaaactt 16246876  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 23360942 - 23361058
Alignment:
Q  20 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaa-gttctttctattgtgcaccttacact 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||       |||||||| |||||||||||| |||||||||||||||||||||| |||    
T  23360942 tgtgtcttaattgtgaatttagtcatgcgtcgtagaattgcaaat-------ctattctttcatacaccaaaaagttctttctattgtgcaccttaaact 23361034  T
Q  119 taagtgataataattaaatacctc 142  Q
    | ||||||||||||| ||||||||    
T  23361035 tgagtgataataattgaatacctc 23361058  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 13896082 - 13895999
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  13896082 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 13895999  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 14036699 - 14036616
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  14036699 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 14036616  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 14380190 - 14380107
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  14380190 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 14380107  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 5916944 - 5917028
Alignment:
Q  62 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  5916944 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 5917028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 36311681 - 36311597
Alignment:
Q  62 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  36311681 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 36311597  T

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Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 21515703 - 21515786
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  21515703 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 21515786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 30019303 - 30019220
Alignment:
Q  63 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  30019303 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 30019220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 16547540 - 16547456
Alignment:
Q  62 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  16547540 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 16547456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 17830767 - 17830845
Alignment:
Q  61 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 139  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||| |||||    
T  17830767 aaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaattgaatac 17830845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 37638788 - 37638703
Alignment:
Q  61 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  37638788 aaattgcaaatctattcttccatacaccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 37638703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 10372714 - 10372799
Alignment:
Q  61 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 146  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||  ||||| ||||||    
T  10372714 aaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaatcgaatacttcatta 10372799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 12963387 - 12963342
Alignment:
Q  62 aattgcaaatctattcttccatacaccaaaagttctttctattgtg 107  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
T  12963387 aattgcaaatctattcttccataccccaaaagttctttcaattgtg 12963342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 6607 - 6678
Alignment:
Q  68 aaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 139  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||| |||||    
T  6607 aaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaattgaatac 6678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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