View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7599_1D_low_29 (Length: 204)
Name: NF7599_1D_low_29
Description: NF7599_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7599_1D_low_29 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 1047111 - 1047301
Alignment:
| Q |
14 |
acatcaactgttgtagttgcaagatccgtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttga |
113 |
Q |
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| T |
1047111 |
acatcaactgttgttgttgcaagatctgtgaacaattcaaatgaggtttattactcatatagtcttgtaaacaagagtaatgtttcaataacttatttga |
1047210 |
T |
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| Q |
114 |
accaaacgcttagtcttcacgaacgcattatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagataattgtga |
204 |
Q |
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| T |
1047211 |
accaaacgcttagtcttcacgaacgcattatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagatgattgtga |
1047301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 1071951 - 1072114
Alignment:
| Q |
41 |
gtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgca |
140 |
Q |
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| T |
1071951 |
gtgatcaattcaaatgaagtttatttcacatatagtcttgtaaacaagagtatggtttcaataacttatttgaaccaaacgcttagtcttcatgaacgcg |
1072050 |
T |
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| Q |
141 |
ttatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagataattgtga |
204 |
Q |
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| T |
1072051 |
ttatatggagtccagaggacaacacttggagcgatattcagtcagtaccaaaaaatgattgtga |
1072114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 1087612 - 1087775
Alignment:
| Q |
41 |
gtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgca |
140 |
Q |
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| T |
1087612 |
gtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacaactagtcatcgcgaacgtg |
1087711 |
T |
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| Q |
141 |
ttatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagataattgtga |
204 |
Q |
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| T |
1087712 |
ttaattggattccagaagacgatacttggagtgttattgagtcgttgccaaaagatgattgtga |
1087775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 1104165 - 1104244
Alignment:
| Q |
41 |
gtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac |
120 |
Q |
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| T |
1104165 |
gtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac |
1104244 |
T |
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