View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7599_1D_low_6 (Length: 381)
Name: NF7599_1D_low_6
Description: NF7599_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7599_1D_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 9283379 - 9283091
Alignment:
| Q |
20 |
caaaatcaccctcatcatctcacaggcacatacatatccatgttatgttcagatgactcaaaaaagagccaataatattacatttgagccggcagtgtga |
119 |
Q |
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| T |
9283379 |
caaaatcaccctcatcatctcacaggcacatacatatccatgttatgttcagatgactcaaaaaagagccattaatattatatttgagccggcagtttga |
9283280 |
T |
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| Q |
120 |
ggctcattgagaagttggcttgctggttcagcagtagaattaggcatcaccattgaaacaattgtgatcgaagcgtactgatcaaaattgatatcctctt |
219 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
9283279 |
ggctcattgagaagttggcttgctggttcaacaatagaattaggtatcaccattgaaactattgtgatcgaagcgtattggtcaaaattgatatgctctt |
9283180 |
T |
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| Q |
220 |
aggaacatttgctaacttacattcctctgccaaataaaatactcactctaccacttgtgcacatagctcattaatatcttaccataata |
308 |
Q |
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| T |
9283179 |
aggaacatttgctaacttacattcctctgtcaaataaaatgctcactctaccacttgtgcacatagctcattaatatcttaccataata |
9283091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 22956333 - 22956254
Alignment:
| Q |
260 |
actcactctaccacttgtgcacatagctcattaatatcttaccataatataaggatcttttgcttccaaatactctaaaa |
339 |
Q |
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|||| |||||||||||||| ||||||||||||| ||||| |||| || ||||| || | ||||||||||||||| |||| |
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| T |
22956333 |
actcgctctaccacttgtgtgcatagctcattaacatcttgccatgatttaaggttcatgtgcttccaaatactcaaaaa |
22956254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 6979788 - 6979864
Alignment:
| Q |
268 |
taccacttgtgcacatagctcattaatatcttaccataatataaggatcttttgcttccaaatactctaaaaaatgg |
344 |
Q |
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|||||||||||| ||||||||| ||| ||||| ||||||| |||| || | | ||||||||||||| ||||||||| |
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| T |
6979788 |
taccacttgtgcgcatagctcactaacatcttcccataatttaagattcatgttcttccaaatactccaaaaaatgg |
6979864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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