View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7600_low_1 (Length: 380)
Name: NF7600_low_1
Description: NF7600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7600_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 99 - 376
Target Start/End: Complemental strand, 30902829 - 30902552
Alignment:
| Q |
99 |
aattattaaaaacaaacattttcctaataacatgactagaatattattacaatccatttcctccgccgcaccaccgccggactccgccgcctcattagaa |
198 |
Q |
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| T |
30902829 |
aattattaaaaacaaacattttcctaataacatgactagaatattattacaatccatttcctccgccgcaccaccgccggactccgccgcctcattagaa |
30902730 |
T |
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| Q |
199 |
tccgacttcgtcgtcatcctcgccgctctcctctgcgctctaatctccgtcgtgggtctcaccgccattgcccgttgcgcctggctccgccgtacccccg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30902729 |
tccgacttcgtcgtcatcctcgccgctctcctctgcgctctaatctccgtcgtgggtctcaccgccattgcccgttgcgcctggctccgccgtacccccg |
30902630 |
T |
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| Q |
299 |
tcgccggagcatcaccggcgacggcgatggccaacaaaggtctcaaaaagaaggttctcaattcacttccgaaattca |
376 |
Q |
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||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30902629 |
tcgccggagcatcaccgtcggcggcggtggccaacaaaggtctcaaaaagaaggttctcaattcacttccgaaattca |
30902552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 30902915 - 30902874
Alignment:
| Q |
18 |
acctcaattattcaacttcccaaaacacaacacaacataaca |
59 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30902915 |
acctcaattattcaacttcccaaaacacaacacaacacaaca |
30902874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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