View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7600_low_3 (Length: 270)
Name: NF7600_low_3
Description: NF7600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7600_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 38835041 - 38835286
Alignment:
| Q |
18 |
atcattgtcactctcgtatccactcactacatatttgttttgattaggattagccctgtgaggcttagcccttgctggctgcagtgcgatctcaaccacc |
117 |
Q |
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| T |
38835041 |
atcattgtcactctcgtatccactcactacatatttgttttgattaggattagccccgtgaggcttagcccttgctggctgcggtgcgatctcaaccacc |
38835140 |
T |
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| Q |
118 |
tcattctttgctataggagagttagaagcagaaccagcagacaaatcttcaatttgatttgtatccttgttagcagcactgtccagtatagaaccgctac |
217 |
Q |
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| T |
38835141 |
tcattctttgctataggagagttagaagcagaaccagcagacaaatcttcaatttgatttgtatccttgttagcagccctgtccagtatagaaccgctac |
38835240 |
T |
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| Q |
218 |
ttttcttgttaaatggag-ctccctcatcttcctcactttcttctc |
262 |
Q |
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| T |
38835241 |
ttttcttgttaaatggagactccctcatcttcctcactttcttctc |
38835286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 9869489 - 9869730
Alignment:
| Q |
19 |
tcattgtcactctcgtatccactcactacatatttgttttgattaggattagccctgtgaggcttagcccttgctggctgcagtgcgatctcaaccacct |
118 |
Q |
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| T |
9869489 |
tcattgtcactctcggattcactgactacatatttcatttgagtacgattggccctctgaggtctagcccttgctggctgaggtgcaatctcaaccacct |
9869588 |
T |
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| Q |
119 |
cattctttgctataggagagttagaagcagaaccagcagacaaatcttcaatttgatttgtatccttgttagcagcactgtccagtatagaaccgctact |
218 |
Q |
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| T |
9869589 |
catcctctgcagtaggagagttagaagtagagccctcggacaaatctgcaattggacttatatccatgttagcagttttgcccaatatagaacc---act |
9869685 |
T |
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| Q |
219 |
tttcttgttaaatggag-ctccctcatcttcctcactttcttctc |
262 |
Q |
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| T |
9869686 |
cttcttgttaaatggtgactccctcatttttctcactttcttctc |
9869730 |
T |
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