View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7601_high_1 (Length: 369)
Name: NF7601_high_1
Description: NF7601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7601_high_1 |
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| [»] scaffold0465 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 355
Target Start/End: Complemental strand, 28520001 - 28519649
Alignment:
| Q |
11 |
ggaatagtggtgtgttcatttctattgggcgaaaattcggttccaaccttcttttctcctttgcgggagaaggcttcgtgggagtttgtttagaatgggg |
110 |
Q |
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| T |
28520001 |
ggaatagtggtgggatcatttctatttggcgaaaatccaattccaaccttcttttctcctttgcgggagaaggcttcgtgggagtttgtttagaatgggg |
28519902 |
T |
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| Q |
111 |
aaggaacaaagtgagatgttttgtggtgaatatttactcgaaatgtgatttagtggcgaaacaaagattgtgggcaaatcttgtgttgattaaaaacact |
210 |
Q |
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| T |
28519901 |
aaggaacaaagtgagatgttttgtggtgaatatttactcgaaatgtgatttagtggcgaaacaaagattgtgggcaaatcttgtgttgattaaaaacact |
28519802 |
T |
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| Q |
211 |
tttggtgatg-------gtgtatggttggggatttcaatgcggtgagccatgcagatgaaagga-ggggggtcaattcggttgtttcatcggcacaatct |
302 |
Q |
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| T |
28519801 |
tttggtgatggtgtgtggtgtatggttggggatttcaatgcggtgagccatgcggatgaaagaagggggggtcaattcggttgtttcatcggcacaatct |
28519702 |
T |
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| Q |
303 |
ttggaaacatatttcttcaattcttttgttttgaatgttgatttatttgatgt |
355 |
Q |
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| T |
28519701 |
ttggaaacatatttcttcaattcttttgttttgaatgttgatttatttgatgt |
28519649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 20135540 - 20135668
Alignment:
| Q |
31 |
tctattgggcgaaaattcggttccaaccttcttttctcctttgcgggagaaggcttcgtgggagtttgtttagaatggggaaggaacaaagtgagatgtt |
130 |
Q |
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| T |
20135540 |
tctatttggagaaaatccgtttcaaacatccttttctcttttgtgggtgaaggctttgtgggagtttgtttagaatggggatgtaagaaacaaagatgtt |
20135639 |
T |
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| Q |
131 |
ttgtggtgaatatttactcgaaatgtgat |
159 |
Q |
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| T |
20135640 |
ttgtggtgaacatttatttcaaatgtgat |
20135668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0465 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0465
Description:
Target: scaffold0465; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 6509 - 6376
Alignment:
| Q |
28 |
atttctattgggcgaaaattcggttccaaccttcttttctcctttgcgggagaaggcttcgtgggagtttgtttagaatggggaaggaacaaagtgagat |
127 |
Q |
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| T |
6509 |
atttctatttggagaaaatccatttccaatcttcttttctcttttgtgggtgaaggttttgtgggagtttgtttagaatggggaagtaataaagagagat |
6410 |
T |
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| Q |
128 |
gttttgtggtgaatatttactcgaaatgtgattt |
161 |
Q |
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| T |
6409 |
gttttgtggtgaacatttattccaaatgtgattt |
6376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 27411464 - 27411403
Alignment:
| Q |
123 |
gagatgttttgtggtgaatatttactcgaaatgtgatttagtggcgaaacaaagattgtggg |
184 |
Q |
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| T |
27411464 |
gagatgtttggtggtgaatatttactctaagtgtgatttggtggcaaaacaaagattgtggg |
27411403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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