View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7601_low_2 (Length: 362)
Name: NF7601_low_2
Description: NF7601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7601_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 6359564 - 6359888
Alignment:
| Q |
16 |
atcccattctccacttcacaaaagtaaaatcccaaccaaatccatgtcacacaaatccccaaaaataatcacnnnnnnnattattccaccacctatgggg |
115 |
Q |
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| T |
6359564 |
atcccattctccacttcacaaaagtaaaatcccaaccaaatccatgtcacacaaatccccaaaaataatcactttttt-attattccac---ctatgggg |
6359659 |
T |
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| Q |
116 |
aagctaataacaacttccaaacctctcattctcaaatcaaaactcctctgtctttcacttttctatctcttcaccactctttttcttgctctttacacca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359660 |
aagctaataacaacttccaaacctctcattctcaaatcaaaactcctctgtttttcacttttctatctcttcaccactctttttcttgctctttacacca |
6359759 |
T |
|
| Q |
216 |
ccctctcccaatccaaatgcttcttcagatcatccccttcagatcccattctcaattctctcttcaattacccttcttcttatggtgaacataaatacgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359760 |
ccctctcccaatccaaatgcttcttcagatcatccccttcagatcccattctcaattctctcttcaattacccttcttcttatggtgaacataaatacgc |
6359859 |
T |
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| Q |
316 |
tgtctcaaccactcgttctacgtgttctt |
344 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6359860 |
tgtctcaaccactcgttctacgtgttctt |
6359888 |
T |
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