View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7602_high_1 (Length: 626)
Name: NF7602_high_1
Description: NF7602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7602_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Complemental strand, 56099110 - 56098502
Alignment:
| Q |
1 |
acccccctaaatttccatattccatacccctctttcccaaaggttcaactctcattgaggtacgatcaccttcaagctcacgataacgatgaaggtacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56099110 |
acccccctaaatttccatattccatacccctctttcccaaaggttcaactctcattgaggtacgatcaccttcaagctcacgataacgatgaaggtacat |
56099011 |
T |
|
| Q |
101 |
tgttagaggttcaatgtaatcatcaaaaccaagcttactcatagcccaaagcacatcttctgcagttattgtcttcctttgctctctctgacaacgttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56099010 |
tgttagaggttcaatgtaatcatcaaaaccaagcttactcatagcccaaagcacatcttctgcagttattgtcttcctttgctctctctgacaacgttca |
56098911 |
T |
|
| Q |
201 |
ttggcttctccagttatgaagctgatgtactcagacacacactcttggattgtttcttttgcatcatcagatatttttgcatgtggtggtagaattttgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56098910 |
ttggcttctccagttatgaagctgatgtactcagacacacactcttggattgtttcttttgcatcatcagatatttttgcatgtggtggtagaatcttgc |
56098811 |
T |
|
| Q |
301 |
gcatgatccttatcacatttgcaattggcataaaacggtcttgttccctcacaatgcattcattgtcttgttctgttccattgttgttctgttctcctac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
56098810 |
gcatgatccttatcacatttgcaattggcataaaacggtcttgttccctcacaatgcattcattgtcttgttctgtaccattgttgttctgttctcctac |
56098711 |
T |
|
| Q |
401 |
ttgctgcctcgtgttcatctcagaaac---tgatagcttcaacgtcccgcctgctactgctgcatccatctcattcatatttaatactcaac-----taa |
492 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
56098710 |
ttgctgcctcgtgttcatctcagaaactgatgatagcttcaacgtc---cctgctactgctgcatccatctcattcatatttaatactcaactaatttaa |
56098614 |
T |
|
| Q |
493 |
tttggtcaaacaaaattcatgtaatctaatccaaatactatttgataccatttcaattttgactgaaagttgaattaattttttaatcaaattaaatatt |
592 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56098613 |
tttggtcaaacaaaattcatgt-atctaatccaaa---tatttgataccatttcaattttgactgaaagttgaattaattttttaatcaaattaaatatt |
56098518 |
T |
|
| Q |
593 |
tttaacatgtccataa |
608 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
56098517 |
tttaacatgtccataa |
56098502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 78 - 283
Target Start/End: Original strand, 14394082 - 14394287
Alignment:
| Q |
78 |
tcacgataacgatgaaggtacattgttagaggttcaatgtaatcatcaaaaccaagcttactcatagcccaaagcacatcttctgcagttattgtcttcc |
177 |
Q |
| |
|
||||| ||||| |||||||| | ||||| ||| | || ||||||||||||||||| || | ||| ||||| || | ||||||||| || | ||| || | |
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|
| T |
14394082 |
tcacggtaacgttgaaggtaaaatgttaaaggatgaacataatcatcaaaaccaagtttccccattgcccatagtatatcttctgctgtaactgtttttc |
14394181 |
T |
|
| Q |
178 |
tttgctctctctgacaacgttcattggcttctccagttatgaagctgatgtactcagacacacactcttggattgtttcttttgcatcatcagatatttt |
277 |
Q |
| |
|
|||| ||||| || || || || || ||||| ||||||||||| ||||| || || ||||| ||||| || ||||||||||| || || || ||||| |
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| T |
14394182 |
tttgttctctttggcatcgatcgtttgcttcggatgttatgaagcttatgtattcggatacacattcttgaatggtttcttttgcgtcgtcggagatttt |
14394281 |
T |
|
| Q |
278 |
tgcatg |
283 |
Q |
| |
|
|||||| |
|
|
| T |
14394282 |
tgcatg |
14394287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 9722763 - 9722705
Alignment:
| Q |
204 |
gcttctccagttatgaagctgatgtactcagacacacactcttggattgtttcttttgc |
262 |
Q |
| |
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||||||||||||||||| ||||| |||| || ||||||||||| | |||||||||||| |
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|
| T |
9722763 |
gcttctccagttatgaaactgataaactctgatacacactcttgtactgtttcttttgc |
9722705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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