View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7602_high_3 (Length: 337)
Name: NF7602_high_3
Description: NF7602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7602_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 41404205 - 41404517
Alignment:
| Q |
8 |
cgaagaatatcatctcttaacgaatcgatggatagatatactcagttgtttgagaaaagtatgagcaaagagatcaagtggcaaagctcgaagtctaaaa |
107 |
Q |
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| T |
41404205 |
cgaagaacatcatctcttaacgaatcgatggatagatatactcagttgtttgagaaaagtatgagcaaagagatcaagtggcaaagctcgaagtctaaaa |
41404304 |
T |
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| Q |
108 |
gcttaagattgacaaacgatgataagattcacaagagtaggcatgctcgtatgttttcaagaagcaatttgtctatgcctaatcttgagtccttaggatt |
207 |
Q |
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| T |
41404305 |
gcttaagattgacaaatgatgataagattcacaagagtaggcatgctcgtatgttttcaagaagcaatttgtctatgcctaatcttgagtccttaggatt |
41404404 |
T |
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| Q |
208 |
cattctacacgatgttcttattgatacaaatgaagcaaataatacagtggaaagtgataatgatgttcaacgtaaatcagtgagcgttcctttaaagatt |
307 |
Q |
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| T |
41404405 |
tattctacacgatgttcttattgatacaaatgaagcaaataatacagtggaaagtgataatgatgttcaacgtaaatcagtgagcgttcctttaaagatt |
41404504 |
T |
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| Q |
308 |
gataaatcacttg |
320 |
Q |
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| T |
41404505 |
gataaatcacttg |
41404517 |
T |
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