View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7602_low_1 (Length: 793)
Name: NF7602_low_1
Description: NF7602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7602_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 639; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 19 - 781
Target Start/End: Complemental strand, 35195772 - 35195014
Alignment:
| Q |
19 |
aaactcttggtagcgaattcaacaccaatagtagatttagattccaaattgaactcgtttctagtgaatctagaaagcaagttggatttaccaacacctg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35195772 |
aaactcttggtagcgaattcaacaccaatagtagatttagattccaaattgaactcgtttctagtgaatctagaaagcaagttggatttaccaacacctg |
35195673 |
T |
|
| Q |
119 |
aatcaccgattagaactagtttgaaaaggtaatcgtattcatcgtctgctctgtatccagccatggttgaagaagaagaactgtagtagagtttgtttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35195672 |
aatcaccgattagaactagtttgaaaaggtaatcgtattcatcgtctgctctgtatccagccatggttgaagaagaagaactgtagtagagtttgtttga |
35195573 |
T |
|
| Q |
219 |
actatttggatttgatttgatgtaacgggaagaatgaaggagggaatttcggtgaattggaattggagttttttagggaaaaggaataaaagatgaaaat |
318 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35195572 |
actaattggatttgatttgatgtaacgggaagaatgaaggagggaatttcggtgaattggaattggagttttttagggaaaaggaatcaaagatgaaaat |
35195473 |
T |
|
| Q |
319 |
gctttgttacggaaatggagcaacctggattttgtgcggatcgtgtagatagccacacttttctcctttttcgacctgtaagcctctcctaaacaatcat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35195472 |
gctttgttacggaaatggagcaacctggattttgtgcggatcgtgtagatagccacacttttctcctttttcgacctgtaagcctctcctaaacaatcat |
35195373 |
T |
|
| Q |
419 |
catttttaattattttaatcaaatcatttacaaattannnnnnnagaagaaatcatttcctaattataattattaagatattccattnnnnnnnnnnnnn |
518 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35195372 |
gatttttaattattttaatcaaatcatttactaattatttttttagaagaaatcatttactaattataattattaagatattccatt--aaaaaaaaaaa |
35195275 |
T |
|
| Q |
519 |
gatatttatttatttaagttgacaaatacgttgatacaagtcttcataaacccaacttagttggtagggacgtttgcattatacatgaatatctggtcaa |
618 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35195274 |
gatatttatttatttaagttgacaaatacgttgatacaagtcttcataaacccaacttagttggtagggacgtttgcattatacatgaatatctagtcaa |
35195175 |
T |
|
| Q |
619 |
tagacttatggacgaagaaaaagtatcttgatacaatataatttcactaaaaataaaaatgatgaatatacttacaatatctatgataatattattatat |
718 |
Q |
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|||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
35195174 |
tagactattggacgaagaaaaaatatcttgatacgatataatttcactaaaaataaaaatgatgaatatacttacaacatctatgataatattat--tat |
35195077 |
T |
|
| Q |
719 |
aaaacggtaaagtacatgtgtctacatatatgattgtattcaagtgattagaatagacatatt |
781 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35195076 |
aaaacggtaaagtacatgtgtcaacatatatgattgtattcaagtgattagaatagacatatt |
35195014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 31789510 - 31789356
Alignment:
| Q |
28 |
gtagcgaattcaacaccaatagtagatttagattccaaattgaactcgtttctagtgaatctagaaagcaagttggatttaccaacacctgaatcaccga |
127 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||| | ||||||||||||| | ||||| | ||| || | || |||||||||||||| || || |||| |
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| T |
31789510 |
gtagcgaattcaacaccaatggtggatttggattcaagattgaactcgtttttggtgaaacgagagagaagatttgatttaccaacaccggagtcgccga |
31789411 |
T |
|
| Q |
128 |
ttagaactagtttgaaaaggtaatcgtattcatcgtctgctctgtatccagccat |
182 |
Q |
| |
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| ||||||| ||||| ||||| || || || || ||||||||||| || ||||| |
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| T |
31789410 |
tcagaactaccttgaataggtagtcatagtcgtcatctgctctgtaacccgccat |
31789356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 39001658 - 39001788
Alignment:
| Q |
28 |
gtagcgaattcaacaccaatagtagatttagattccaaattgaactcgtttctagtgaatctagaaagcaagttggatttaccaacacctgaatcaccga |
127 |
Q |
| |
|
||||| ||||||||||| || || ||||| |||||||| ||||| || ||||||||||||||||| | | ||||| || |||||||| |||||||||| |
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| T |
39001658 |
gtagcaaattcaacaccgatggtggatttggattccaagttgaattcatttctagtgaatctagataaaagattggactttccaacaccagaatcaccga |
39001757 |
T |
|
| Q |
128 |
ttagaactagtttgaaaaggtaatcgtattc |
158 |
Q |
| |
|
| | ||| | ||||| | |||||||||||| |
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| T |
39001758 |
tcaaaaccaacttgaacaagtaatcgtattc |
39001788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 34699743 - 34699597
Alignment:
| Q |
28 |
gtagcgaattcaacaccaatagtagatttagattccaaattgaactcgtttctagtgaatctagaaagcaagttggatttaccaacacctgaatcaccga |
127 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||| | |||| |||||| | |||||||||||||| | ||| ||||||||||||||||||||||| | |
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| T |
34699743 |
gtagcgaattcaacgccaatggtggatttagattcgaggctgaattcgtttttggtgaatctagaaagaaggttagatttaccaacacctgaatcaccaa |
34699644 |
T |
|
| Q |
128 |
ttagaactagtttgaaaaggtaatcgtattcatcgtctgctctgtat |
174 |
Q |
| |
|
| | ||| | |||||| || |||||||| |||||||| ||||||||| |
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| T |
34699643 |
tcaaaaccactttgaatagataatcgtaatcatcgtcggctctgtat |
34699597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 24249413 - 24249515
Alignment:
| Q |
26 |
tggtagcgaattcaacaccaatagtagatttagattccaaattgaactcgtttctagtgaatctagaaagcaagttggatttaccaacacctgaatcacc |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||| || ||||| || | |||||||||||||||||| ||||| || |
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| T |
24249413 |
tggtggcgaattcaacaccaatagtagatttagactccaaacaaaactcatttctagtaaacctagagagaatgttggatttaccaacaccagaatcccc |
24249512 |
T |
|
| Q |
126 |
gat |
128 |
Q |
| |
|
||| |
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|
| T |
24249513 |
gat |
24249515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 30648327 - 30648377
Alignment:
| Q |
28 |
gtagcgaattcaacaccaatagtagatttagattccaaattgaactcgttt |
78 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||| |||| |||||| |
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|
| T |
30648327 |
gtagcgaattcaacgccaatggtggatttagattccaaactgaattcgttt |
30648377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 710 - 762
Target Start/End: Complemental strand, 550535 - 550483
Alignment:
| Q |
710 |
ttattatataaaacggtaaagtacatgtgtctacatatatgattgtattcaag |
762 |
Q |
| |
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||||| |||||||||||| ||||||| ||||||||||||||| | |||||||| |
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| T |
550535 |
ttattgtataaaacggtagagtacatatgtctacatatatgactatattcaag |
550483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 31090132 - 31090168
Alignment:
| Q |
26 |
tggtagcgaattcaacaccaatagtagatttagattc |
62 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
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|
| T |
31090132 |
tggtagcgaattcaacaccaatggtagatttagattc |
31090168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 687
Target Start/End: Original strand, 26582613 - 26582654
Alignment:
| Q |
646 |
ttgatacaatataatttcactaaaaataaaaatgatgaatat |
687 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |||||||||| |
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|
| T |
26582613 |
ttgatacaatataaattcgctaaaaataaaagtgatgaatat |
26582654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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