View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7602_low_3 (Length: 455)

Name: NF7602_low_3
Description: NF7602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7602_low_3
NF7602_low_3
[»] chr2 (3 HSPs)
chr2 (1-237)||(29310922-29311158)
chr2 (323-437)||(29311246-29311360)
chr2 (80-133)||(27494169-27494222)
[»] chr4 (5 HSPs)
chr4 (1-237)||(9513956-9514206)
chr4 (325-379)||(9514293-9514347)
chr4 (80-141)||(53619436-53619497)
chr4 (80-141)||(23255563-23255624)
chr4 (112-149)||(48657141-48657178)
[»] chr7 (4 HSPs)
chr7 (80-141)||(36931898-36931959)
chr7 (80-141)||(38832152-38832213)
chr7 (82-130)||(9281334-9281382)
chr7 (82-130)||(9292305-9292353)
[»] chr6 (1 HSPs)
chr6 (80-141)||(17249501-17249562)
[»] chr5 (1 HSPs)
chr5 (80-141)||(2917557-2917618)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 29310922 - 29311158
Alignment:
Q  1 taataataacaagatatgctggtatatatgcaccattaaagactataggaaaacatataaactaaaacataagtgttcatctaacggcgcagtttgttgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29310922 taataataacaagatatgctggtatatatgcaccattaaagactataggaaaacatataaactaaaacataagtgttcatctaacggcgcagtttgttgc 29311021  T
Q  101 ctacttaccttctattcatatataagtaatattgatagtaatgtatagttttctttgttctataatctccttattcatgatcataaccatgggcatagag 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29311022 ctaattaccttctattcatatataagtaatattgatagtaatgtatagttttctttgttctataatctccttattcatgatcataaccatgggcatagag 29311121  T
Q  201 tactgagcttccaagttaatctgataatattacccca 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  29311122 tactgagcttccaagttaatctgataatattacccca 29311158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 323 - 437
Target Start/End: Original strand, 29311246 - 29311360
Alignment:
Q  323 ttaagaagaaatttacttttcgatcaccaaatcatatctctaaacggtcttaaaattagtaagtcgtatgttttcgattgttgtaaacccaatacacatt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29311246 ttaagaagaaatttacttttcgatcaccaaatcatatctctaaacggtcttaaaattagtaagtcgtatgttttcgattgttgtaaacccaatacacatt 29311345  T
Q  423 gttcatttctgttgg 437  Q
    |||||||||||||||    
T  29311346 gttcatttctgttgg 29311360  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 27494222 - 27494169
Alignment:
Q  80 tctaacggcgcagtttgttgtctacttaccttctattcatatataagtaatatt 133  Q
    ||||||||||||| |||||| || ||| ||| |||||||||| |||||||||||    
T  27494222 tctaacggcgcagcttgttgcctgcttgcctcctattcatatgtaagtaatatt 27494169  T

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Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9513956 - 9514206
Alignment:
Q  1 taataataacaagatatgctggtatatatgcaccattaaagactataggaaaacatataaactaaaacataagtgttcatctaacggcgcagtttgttgt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||  ||||||     
T  9513956 taataataacaagatatgctagtatatatgcaccattaaagactataggaaaacagataaactaaaacataagtgttcatctagcggcacacattgttgc 9514055  T
Q  101 ctacttaccttctattcatatataagtaatattgatagtaatgtatagttttctttgttctataatctcct--------------tattcatgatcataa 186  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||    
T  9514056 ctacttacctcctattcatatgtaagtaatattgatagtaatgtatagttttctttgttctataatctccttattataatctccgtattcatgatcataa 9514155  T
Q  187 ccatgggcatagagtactgagcttccaagttaatctgataatattacccca 237  Q
    ||| || ||||||| ||| |||||||||||||||| ||||||||| |||||    
T  9514156 ccacggacatagagcactcagcttccaagttaatccgataatattgcccca 9514206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 379
Target Start/End: Original strand, 9514293 - 9514347
Alignment:
Q  325 aagaagaaatttacttttcgatcaccaaatcatatctctaaacggtcttaaaatt 379  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  9514293 aagatgaaatttacttttcgatcaccaaatcatatctctaaacgatcttataatt 9514347  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 53619497 - 53619436
Alignment:
Q  80 tctaacggcgcagtttgttgtctacttaccttctattcatatataagtaatattgatagtaa 141  Q
    |||| |||||||| |||||| |||||||||| |||||||| | |||||||||||||||||||    
T  53619497 tctagcggcgcagcttgttgcctacttacctcctattcatgtgtaagtaatattgatagtaa 53619436  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 23255624 - 23255563
Alignment:
Q  80 tctaacggcgcagtttgttgtctacttaccttctattcatatataagtaatattgatagtaa 141  Q
    |||| |||||||| ||||||||  ||||||| |||||||||| | |||||||||||||||||    
T  23255624 tctagcggcgcagcttgttgtccgcttacctcctattcatatgtgagtaatattgatagtaa 23255563  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 48657141 - 48657178
Alignment:
Q  112 ctattcatatataagtaatattgatagtaatgtatagt 149  Q
    |||||||| |||||||||||||||||||||||||||||    
T  48657141 ctattcatgtataagtaatattgatagtaatgtatagt 48657178  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 36931898 - 36931959
Alignment:
Q  80 tctaacggcgcagtttgttgtctacttaccttctattcatatataagtaatattgatagtaa 141  Q
    |||| |||||||| ||||| ||  ||| ||| |||||||||| |||||||||||||||||||    
T  36931898 tctagcggcgcagcttgttatccgcttgcctcctattcatatgtaagtaatattgatagtaa 36931959  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 38832213 - 38832152
Alignment:
Q  80 tctaacggcgcagtttgttgtctacttaccttctattcatatataagtaatattgatagtaa 141  Q
    |||| |||||||| |||||| |  ||| ||| |||||||||| |||||||||||||||||||    
T  38832213 tctagcggcgcagcttgttgcccgcttgcctcctattcatatgtaagtaatattgatagtaa 38832152  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 9281334 - 9281382
Alignment:
Q  82 taacggcgcagtttgttgtctacttaccttctattcatatataagtaat 130  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||| ||||    
T  9281334 taacggtgcagtttgttgtctgcttaccttatattcatatgtaattaat 9281382  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 9292305 - 9292353
Alignment:
Q  82 taacggcgcagtttgttgtctacttaccttctattcatatataagtaat 130  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||| ||||    
T  9292305 taacggtgcagtttgttgtctgcttaccttatattcatatgtaattaat 9292353  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 17249501 - 17249562
Alignment:
Q  80 tctaacggcgcagtttgttgtctacttaccttctattcatatataagtaatattgatagtaa 141  Q
    |||| |||||||| |||||| |  ||| ||| |||||||| |||||||||||||||||||||    
T  17249501 tctagcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaatattgatagtaa 17249562  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 2917557 - 2917618
Alignment:
Q  80 tctaacggcgcagtttgttgtctacttaccttctattcatatataagtaatattgatagtaa 141  Q
    |||| ||||||||||||||| || ||| ||| |||||||| | || ||||||||||||||||    
T  2917557 tctagcggcgcagtttgttgcctgcttgcctcctattcatgtgtaggtaatattgatagtaa 2917618  T

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