View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7602_low_4 (Length: 433)
Name: NF7602_low_4
Description: NF7602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7602_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 16701554 - 16701146
Alignment:
| Q |
16 |
caatgttcataatgcttggtaatatgatcaagaaggaccattttgattatgcagttgaagatgtaagttactcactcccatcacctatgtttacaagttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16701554 |
caatgttcataatgcttggtaatatgatcaagaaggaccattttgattatgcagttgaagatgtaagttactcactcccatcacctatgtttacaagttt |
16701455 |
T |
|
| Q |
116 |
gattgctttcnnnnnnnnnnnnnncattatgtatgatgagttgtcattgtttccttctcaactatatgtgatatttgaaattccnnnnnnnn---aatgt |
212 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
16701454 |
gattgctttctctttttagtttttcattatgtatgatgagttttcattgtttccttctcaactatatgtgatatttgaaatttctttttttttttaatgt |
16701355 |
T |
|
| Q |
213 |
caatatattctactatgcattagaatattttcatttacttaaagtcggcttgaaactgcgttgaaattgccatgactagataagccatgttttagaactt |
312 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16701354 |
caatatattcgactatgcattagaatattttcatttgcttaaagtcggcttgaaactgcgttgaaattgccatgactagataagccatgttttagaactt |
16701255 |
T |
|
| Q |
313 |
cgatcctacaacatgatgaaaggcaatgacttcgtagttcaaaatacgctataagcacaagagtatcacctcaaatctagtagcatataatggctttgtt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16701254 |
cgatcctacaacatgatgaaaggcaatgacatcgtagttcaaaatacgctataagcacaagagtatcacctcaaatctagtagcatataatggctttgtt |
16701155 |
T |
|
| Q |
413 |
gaatatatt |
421 |
Q |
| |
|
||||||||| |
|
|
| T |
16701154 |
gaatatatt |
16701146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University