View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7603_high_3 (Length: 281)
Name: NF7603_high_3
Description: NF7603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7603_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 51920540 - 51920290
Alignment:
| Q |
15 |
cccgcgcccctaattcaattacaatttcttccattttctaatcccaattttacccttctccttcatcttcatcctcacaattacaatttacaataacaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51920540 |
cccgcgcccctaattcaattacaatttcttccattttctaatcccaattttacccttctccttcatcttcatcctcacaattacaatttacaataacaaa |
51920441 |
T |
|
| Q |
115 |
accttgtttttgttcaaaaccctaacaacccattcatggccgcaccaccacccaccaaagaccaagtcctctctctcctcgccgccgccaacaaccacgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51920440 |
accttgtttttgttcaaaaccctaacaacccattcatggccgcaccaccacccaccaaagaccaagtcctctctctcctcgccgccgccaacaaccacgg |
51920341 |
T |
|
| Q |
215 |
cgacatctccgtcaaaaccacttccctcaaacaagccaaagaccttcttct |
265 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51920340 |
cgacatctccgtcaagaccacttccctcaaacaagccaaagaccttcttct |
51920290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University