View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7603_high_7 (Length: 248)
Name: NF7603_high_7
Description: NF7603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7603_high_7 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3619984 - 3620223
Alignment:
| Q |
1 |
aatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactcttttttgatgtttctaatttcttcttgagctttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3619984 |
aatgtctcttttatcacagccttaaaatatacaaacttttgaatatcatcttcatctatgaactcttttttgatgtttctaatttcttcttgagctttct |
3620083 |
T |
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| Q |
101 |
tcattgctcttggattctttattaatccggtcatcacccaaactgatgtggctgcacttgtgtcagtagctgctacaagtagattctgtgatcatta--- |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3620084 |
tcattgctcttggattctttattaatccggtcatcacccaaactgatgtggctgcacttgtgtcagtagctgctacaagtagattctgtgatcattaaaa |
3620183 |
T |
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| Q |
198 |
--aaagcaaagcaaataattaggacattatatctatgttc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3620184 |
gcaaagcaaagcaaataattaggacattatatctatgttc |
3620223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3630360 - 3630565
Alignment:
| Q |
1 |
aatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactcttttttg------atgtttctaatttcttcttgag |
94 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3630360 |
aatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatttcttcttgag |
3630459 |
T |
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| Q |
95 |
ctttcttcattgctcttggattctttattaatccggtcatcacccaaactgatgtggctgcacttgtgtcagtagctgctacaagtagattctgtgatca |
194 |
Q |
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| T |
3630460 |
ctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaagttgtgtcggtagctgcgacaagtaggttctgtgatca |
3630559 |
T |
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| Q |
195 |
ttaaaa |
200 |
Q |
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| |||| |
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| T |
3630560 |
tcaaaa |
3630565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 15725 - 15520
Alignment:
| Q |
1 |
aatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactcttttttg------atgtttctaatttcttcttgag |
94 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15725 |
aatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatttcttcttgag |
15626 |
T |
|
| Q |
95 |
ctttcttcattgctcttggattctttattaatccggtcatcacccaaactgatgtggctgcacttgtgtcagtagctgctacaagtagattctgtgatca |
194 |
Q |
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||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||| | ||||||| |||||||| |||||||| ||||||||||| |
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| T |
15625 |
ctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaagttgtgtcggtagctgcgacaagtaggttctgtgatca |
15526 |
T |
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| Q |
195 |
ttaaaa |
200 |
Q |
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| |||| |
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| T |
15525 |
tcaaaa |
15520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8979262 - 8979192
Alignment:
| Q |
1 |
aatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactctttttt |
71 |
Q |
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||||||||||||||||| ||||| ||||||| | |||||||||||||||||||||| || |||||||| |
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| T |
8979262 |
aatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttt |
8979192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 20074255 - 20074378
Alignment:
| Q |
37 |
ttttgaatatcatcttcatctatgaactcttttttga----tg--tttctaatttcttcttgagctttcttcattgctcttggattctttattaatccgg |
130 |
Q |
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||||| ||||||||||||||||| || |||||||| | || |||||||| |||| ||| ||||||||||| |||||||||| ||||||||| | | |
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| T |
20074255 |
ttttgtatatcatcttcatctataaattcttttttaacttttgaatttctaatctcttgttgtactttcttcattactcttggattttttattaatgcag |
20074354 |
T |
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| Q |
131 |
tcatcacccaaactgatgtggctg |
154 |
Q |
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|||| |||| |||| |||||||| |
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| T |
20074355 |
tcatagcccatactgttgtggctg |
20074378 |
T |
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