View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7603_high_8 (Length: 236)
Name: NF7603_high_8
Description: NF7603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7603_high_8 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3619871 - 3619649
Alignment:
| Q |
1 |
catagggaccctgagacatggaaagaccctgacgagtattatccagagagattcttaaataatgatatagattttaagggacaaaatttcgagtttattc |
100 |
Q |
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||||||||||| ||||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3619871 |
catagggaccccgagacatggaaagaccccgatgagttttatccagagagattcttaaacaatgatatagattttaagggacaaaatttcgagtttattc |
3619772 |
T |
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| Q |
101 |
cattcggtgcagggcgtagaatatgccctggcataccattaggaatcgccacagtagaaatgataaccgcaaaccttcttaactcttttgattgggaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3619771 |
cattcggtgcagggcgtagaatatgccctggcataccattaggaatcgccacagtagaaatgataaccgcaaaccttcttaactcttttgattgggaaat |
3619672 |
T |
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| Q |
201 |
gcctgaaggtatgacaaaggaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
3619671 |
gcctgaaggtatgacaaaggaag |
3619649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3630247 - 3630025
Alignment:
| Q |
1 |
catagggaccctgagacatggaaagaccctgacgagtattatccagagagattcttaaataatgatatagattttaagggacaaaatttcgagtttattc |
100 |
Q |
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||||||||||| ||| |||||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||| |||| |||| ||||| || | |
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| T |
3630247 |
catagggaccccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaatgatatagattttaaaggacgggattttgagttgatac |
3630148 |
T |
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| Q |
101 |
cattcggtgcagggcgtagaatatgccctggcataccattaggaatcgccacagtagaaatgataaccgcaaaccttcttaactcttttgattgggaaat |
200 |
Q |
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| T |
3630147 |
catttggtgcagggcgtagaatttgccctggcatgccattgggaatcgccacggtggaaatgataattgcaaaccttcttaattcatttgattgggaaac |
3630048 |
T |
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| Q |
201 |
gcctgaaggtatgacaaaggaag |
223 |
Q |
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||||||||| ||||||||||||| |
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| T |
3630047 |
gcctgaagggatgacaaaggaag |
3630025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15838 - 16060
Alignment:
| Q |
1 |
catagggaccctgagacatggaaagaccctgacgagtattatccagagagattcttaaataatgatatagattttaagggacaaaatttcgagtttattc |
100 |
Q |
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||||||||||| ||| |||||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||| |||| |||| ||||| || | |
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| T |
15838 |
catagggaccccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaatgatatagattttaaaggacgggattttgagttgatac |
15937 |
T |
|
| Q |
101 |
cattcggtgcagggcgtagaatatgccctggcataccattaggaatcgccacagtagaaatgataaccgcaaaccttcttaactcttttgattgggaaat |
200 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||||||| |||||||||||||| || ||||||||||||| |
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| T |
15938 |
catttggtgcagggcgtagaatttgccctggcatgccattgggaatcgccacggtggaaatgataattgcaaaccttcttaattcatttgattgggaaac |
16037 |
T |
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| Q |
201 |
gcctgaaggtatgacaaaggaag |
223 |
Q |
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||||||||| ||||||||||||| |
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| T |
16038 |
gcctgaagggatgacaaaggaag |
16060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 31071833 - 31071746
Alignment:
| Q |
17 |
catggaaagaccctgacgagtattatccagagagattcttaaataatgatatagattttaagggacaaaatttcgagtttattccatt |
104 |
Q |
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||||||| || || || |||| |||||||||||||||| || || |||||||||||| || |||||| |||||||| | |||||||| |
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| T |
31071833 |
catggaaggatccagaagagttttatccagagagattcataggtagtgatatagatttaaaaggacaagatttcgagctgattccatt |
31071746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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