View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7603_low_1 (Length: 587)
Name: NF7603_low_1
Description: NF7603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7603_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 583
Target Start/End: Complemental strand, 9828618 - 9828052
Alignment:
| Q |
19 |
acttagcttatcttatacaagttcaacatgatgatagcaacaaccatcaaagtgtcactttggagccataagatcaacagggggtcttccctctaggtac |
118 |
Q |
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| T |
9828618 |
acttagcttatcttatacaagttcaacatgatgatggcaacaaccatcaaggtgtcactttggagccataagatcaacagggggtcttccctctaggtac |
9828519 |
T |
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| Q |
119 |
ggtcaccatattttctctacaattactcacttgttacttactagcataatggctgactttgacatcaaaatgtttttt--gcaggtacatccatgttggt |
216 |
Q |
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| T |
9828518 |
gatcaccatattttctctacaattactcacttgttacttactaccataatgtctgactttgacatcaaaatgttttttttgcaggtacacccatgttggt |
9828419 |
T |
|
| Q |
217 |
gatatgtatatataccaatgggggtggagactagttttacctctctcacccccaaacaccgattattccccacaaaaatcccgaacatgtactccggt-g |
315 |
Q |
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| T |
9828418 |
gatatgtatatataccaatgggggtggagattagttttacctctctcacccccaacccccgagtatcccgcacagaaaacccgaacatgtactccggcag |
9828319 |
T |
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| Q |
316 |
ggtaggaattttgatctccatccccatctctggtagggatcgagtttcccctccatgcacccatcccctgatggtattttagtaatatcacatcgtttct |
415 |
Q |
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||| ||||||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9828318 |
ggttggaattttgatatccatccccgtctcttatagggatcgagtttccccaccatgcacccatcccctgatgggattttagtaatatcacatcgtttct |
9828219 |
T |
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| Q |
416 |
cgtcttctaacatcaatagattaacaaataagtcatatgcaccttgttcttgagaagatggcacccgattgtgttctttattcctaagcaaccgatcttc |
515 |
Q |
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| T |
9828218 |
cgtcttctaacatcaatagattaacaaataagtcatatgcaccgtgttcttgagaagatgacacccgattgtgttctttattcctaagcaaccgatctac |
9828119 |
T |
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| Q |
516 |
catcactctcattttaccctaaaacgaaaataatttaaaaatccgatctactatgagtattatctacc |
583 |
Q |
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| T |
9828118 |
catcactctcattttaccctaaaacgaaaataa-ttaaaaatccgacctactatgagtattatttacc |
9828052 |
T |
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