View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7603_low_11 (Length: 251)
Name: NF7603_low_11
Description: NF7603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7603_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 4221542 - 4221781
Alignment:
| Q |
10 |
aagaatatatggttttatcatgtatgaaacttcttttgtattttctataaccgtgtggaccgctcactaaatagtatcactgaaataatttgatgacaaa |
109 |
Q |
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| T |
4221542 |
aagaaaatatggttttatcatgtatgaaacttgttttgtattatctataaccgtgtggaccgctcactaaatagtatcactgaaataatttgatgacaaa |
4221641 |
T |
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| Q |
110 |
tatacatgaatgagtttttctgtaacaaacacaattattacattagcatcttatttgcttcatcatccaattttagtctcaaattctcatgtgttgaaaa |
209 |
Q |
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| T |
4221642 |
tatacatgaatgagtttttctgtcacaaacacaattattacattggcatcttatttgcctcataatccaattttagtctcaaattctcatgtgttgaaaa |
4221741 |
T |
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| Q |
210 |
acttctacattaagaatttaattagtatacaattgtggtt |
249 |
Q |
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| T |
4221742 |
acttctacattaagaatttaattagtacacacttgtggtt |
4221781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 3823059 - 3823173
Alignment:
| Q |
44 |
tttgtattttctataaccgtgtggaccgctcactaaatagtatcactgaaataatttgatgaca---aat-atacatgaatgagtttttctgtaacaaac |
139 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||||| ||| |||||||||||||||||| || |||||| |
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| T |
3823059 |
tttgaattttctataaccgtgtggaccgctcactaaacagtatcattcaaataatttaatgacaatcaataatacatgaatgagtttttttgccacaaac |
3823158 |
T |
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| Q |
140 |
acaattattacatta |
154 |
Q |
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|||||||| |||||| |
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| T |
3823159 |
acaattatcacatta |
3823173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 3925298 - 3925264
Alignment:
| Q |
36 |
aaacttcttttgtattttctataaccgtgtggacc |
70 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
3925298 |
aaacttcttttgaattttctataaccgtgtggacc |
3925264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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