View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7603_low_3 (Length: 360)
Name: NF7603_low_3
Description: NF7603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7603_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 129 - 339
Target Start/End: Complemental strand, 30336813 - 30336622
Alignment:
| Q |
129 |
tattgaagggaggacaggtggaggtgcatggagaaagaacaaaaccacaaac-----aatgtattttattccactatgtggctgcatatgcattttatta |
223 |
Q |
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| T |
30336813 |
tattgaagggaggacaggtggaggtgcatggagaaagaacaaaaccacaaacaatataatgtattttattccactatgtggctgc--atgcattttat-- |
30336718 |
T |
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| Q |
224 |
gttaataaggtccaatttatttacattaagccaggagaatgttaatgtaataatgttttaattcaaattaagtacacagtagatggataacaatttggtt |
323 |
Q |
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| T |
30336717 |
--------------------ttacattaagccaggagaatgttaatgtaataatggtttaattcaaattaagtacacagtagatggataacaatttggtt |
30336638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 30337074 - 30336959
Alignment:
| Q |
14 |
aaagcaagtattatcagtgcttgtgttattgttgaagccattgattcagtg----ttttggattttgggaaatggaaaagatgaatggaatgtgggtgat |
109 |
Q |
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| T |
30337074 |
aaagcaagtattatcagtgcttgtgtt---gttgaacccattgattcagtgagtgttttggattttgggaaatggaaaagatgaatggaatgtgggtga- |
30336979 |
T |
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| Q |
110 |
ttgtgttgttatatactact |
129 |
Q |
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| T |
30336978 |
ttgtattgttatatactact |
30336959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 30327961 - 30327900
Alignment:
| Q |
62 |
gtgttttggattttgggaaatggaaaagatgaatggaatgtgggtgatttgtgttgttatatac |
125 |
Q |
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| T |
30327961 |
gtgttttggattctgggat-tggaaaagatgaatgaaatgtgggtggttt-tgttgttatatac |
30327900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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