View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7603_low_5 (Length: 299)
Name: NF7603_low_5
Description: NF7603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7603_low_5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 35335096 - 35335394
Alignment:
| Q |
1 |
ccttgaacagctattaagcttctaggatggaaaattgaacgcagtggtgtgtgagcaggggcaagagcaggagtgtgatgatggtgggggtgagggttgg |
100 |
Q |
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| T |
35335096 |
ccttgaacagctattaagcttctaggatggaaaattgaacgcagtggtgtgtgagcaggggcaagagcaggagtgtgatgatggcgggggtgagggttgg |
35335195 |
T |
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| Q |
101 |
gagttggagatttagtaggtacatgggcgtggaatggagggtgaattggaatgtgtttgtgagcaggggcgtgagcaggagggtggggatgtgttggtgg |
200 |
Q |
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| T |
35335196 |
gagttggagatttagtaggtacatgggcgtggaatggagggtgaattggaatgtgtttgtgagcaggggcgtgagcaggagggtggtgatgtgttggtgg |
35335295 |
T |
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| Q |
201 |
ttgaataggggcatgagttagagggcgttgatggttgtgatgagttggaggttttgcatggcgaggaggatgtactggaacatgtttgtgaacaggggc |
299 |
Q |
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| T |
35335296 |
ttgaataggcgcatgagttagagggcgttgatggttgtgatgagttggaggttttgcatggcgaggaggatgtactggaacatgtttgtgaacaggggc |
35335394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 35335492 - 35335658
Alignment:
| Q |
136 |
ggagggtgaattggaatgtgtttgtgagcaggggcgtgagcaggagggtg---gggatgtgttggtggttgaataggggcatgagttagagggcgttgat |
232 |
Q |
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| T |
35335492 |
ggaggatgaactggaacatgtttgtgaataggagcatgagcaggagagtgatggcgatgtgttggaggttgaataggggaatgagcaggagtgtgttgat |
35335591 |
T |
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| Q |
233 |
ggttgtgatgagttggaggttttgcatggcgaggaggatgtactggaacatgtttgtgaacaggggc |
299 |
Q |
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| T |
35335592 |
gacggtgatgggttggaggtttagcatggtgaggaggatgaactggaacatgtttgtgaacaggggc |
35335658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 292
Target Start/End: Original strand, 35335378 - 35335519
Alignment:
| Q |
154 |
tgtttgtgagcaggggcgtgagcaggagg---gtggggatgtgttggtggttgaataggggcatgagttagagggcgttgatggttgtgatgagttggag |
250 |
Q |
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| T |
35335378 |
tgtttgtgaacaggggcatgagcaggaggctggtggtgatgcgttggaggttgaacaggggaatgagtaggagggtgttgatggcgatgatgggttggag |
35335477 |
T |
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| Q |
251 |
gttttgcatggcgaggaggatgtactggaacatgtttgtgaa |
292 |
Q |
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| T |
35335478 |
gtttagcatgatgaggaggatgaactggaacatgtttgtgaa |
35335519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 16592096 - 16592030
Alignment:
| Q |
188 |
gatgtgttggtggttgaataggggcatgagttagagggcgttgatggttgtgatgagttggaggttt |
254 |
Q |
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| T |
16592096 |
gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtggtgatgggttggaggttt |
16592030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 16602546 - 16602460
Alignment:
| Q |
188 |
gatgtgttggtggttgaataggggcatgagttagagggcgttgatggttgtgatgagttggaggttttgcatggcgaggaggatgta |
274 |
Q |
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| T |
16602546 |
gatgggttggaggttgaacaggggcatgagcaggagggtgttgatggtagggatgggttggaggtttagcatggtgagaagggtgta |
16602460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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