View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7603_low_6 (Length: 295)
Name: NF7603_low_6
Description: NF7603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7603_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 56 - 275
Target Start/End: Original strand, 45105476 - 45105695
Alignment:
| Q |
56 |
tgttacaataacatgatgataagaaaaaacaatatatttacttttgggtatatgtgatattgacttcttttcttttgcgacgtactaattatcttaaagt |
155 |
Q |
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| T |
45105476 |
tgttacgataacatgatgataagaaaaaacaatatatttacttttgggtatatgtgatattgacttcttttcttttgcgacgtactaattatcttaaagt |
45105575 |
T |
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| Q |
156 |
atcattaacatactgaattgattatgcataaatgaattaatagatggacaagacctctatacttggtgaagcaatcaattatgtgaaactacttcaagaa |
255 |
Q |
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| T |
45105576 |
atcattaacatactgaattgattatgcataaattaattaatagatggacaagacctctatacttggtgaagcaatcaattatgtgaaaatacttcaagaa |
45105675 |
T |
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| Q |
256 |
cgtgtgaaggagttagagga |
275 |
Q |
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| T |
45105676 |
cgtgtgaaggagttagagga |
45105695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 152 - 275
Target Start/End: Original strand, 45131869 - 45131991
Alignment:
| Q |
152 |
aagtatcattaacatactgaattgattatgcataaatgaattaatagatggacaagacctctatacttggtgaagcaatcaattatgtgaaactacttca |
251 |
Q |
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| T |
45131869 |
aagtagcattaacatattgaat-gattttgcataaattaattaatagatggacaagaactatatacttggtgaagcaatcagttatgtgaaactacttca |
45131967 |
T |
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| Q |
252 |
agaacgtgtgaaggagttagagga |
275 |
Q |
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| T |
45131968 |
agaacgtgtgaaggagctagagga |
45131991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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