View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7604_high_1 (Length: 527)

Name: NF7604_high_1
Description: NF7604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7604_high_1
NF7604_high_1
[»] chr7 (12 HSPs)
chr7 (1-307)||(22831877-22832182)
chr7 (303-515)||(22835144-22835356)
chr7 (66-173)||(22816243-22816350)
chr7 (301-515)||(22886610-22886824)
chr7 (75-169)||(22886423-22886524)
chr7 (67-173)||(22810585-22810690)
chr7 (66-121)||(22843080-22843135)
chr7 (77-157)||(22843134-22843214)
chr7 (66-123)||(22874013-22874070)
chr7 (1-44)||(22841502-22841545)
chr7 (1-44)||(22894811-22894854)
chr7 (1-47)||(22859215-22859261)
[»] chr1 (3 HSPs)
chr1 (328-460)||(35877111-35877242)
chr1 (1-43)||(21149819-21149861)
chr1 (296-365)||(897241-897310)
[»] chr5 (1 HSPs)
chr5 (222-459)||(4523922-4524154)
[»] chr4 (1 HSPs)
chr4 (287-368)||(52934488-52934570)
[»] scaffold0533 (1 HSPs)
scaffold0533 (302-392)||(3152-3242)
[»] chr8 (1 HSPs)
chr8 (228-270)||(42447348-42447390)
[»] chr3 (1 HSPs)
chr3 (410-460)||(29675556-29675606)
[»] chr2 (1 HSPs)
chr2 (410-455)||(35984842-35984887)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 22831877 - 22832182
Alignment:
Q  1 aattgaatgtgtgaaattaaaacatcaatgtcgtctaaattcttaaa-gtgnnnnnnnnnnnnccttttcaaacttgaatgtgtggacttgacaagttac 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||             ||||||||||||||||||||||||||||||||||||    
T  22831877 aattgaatgtgtgaaattaaaacatcaatgtcgtctaaattcttaaaagtgttttttttttt--cttttcaaacttgaatgtgtggacttgacaagttac 22831974  T
Q  100 tattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgtttgttttgacatagtcacctcatctctaaatataag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22831975 tattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgtttgttttgacatagtcacctcatctctaaatataag 22832074  T
Q  200 acgatttataagagaaaatgtatgtccttaaatataagactcactacaaattactaaatgcatttgttatttttcttcttctttctaatatacccctatt 299  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22832075 acgatttataaaagaaaatgtatgtccttaaatacaagactcactacaaattactaaatgcatttgttatttttcttcttctttctaatatacccctatt 22832174  T
Q  300 aatactat 307  Q
    ||||||||    
T  22832175 aatactat 22832182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 303 - 515
Target Start/End: Original strand, 22835144 - 22835356
Alignment:
Q  303 actatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttac 402  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  22835144 actataaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatatagcaatagatacatacatttcagataaaaattttac 22835243  T
Q  403 tccaaagacttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacgaaggaaannnnnnncttcttgcaaaaatcgaggcgaaatttc 502  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||    
T  22835244 tccaaagacttttcttaagacacgtgatttttgtaaagtgttcttataaaaaaggatgaaggaaatttttttcttcttgcaaaaatcgaggcgaaatttc 22835343  T
Q  503 gagccacaggttc 515  Q
    |||||||| ||||    
T  22835344 gagccacatgttc 22835356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 22816243 - 22816350
Alignment:
Q  66 tttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgttt 165  Q
    ||||| |||||||||||||| ||||||   ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||      
T  22816243 tttcacacttgaatgtgtggccttgacctattactattgattatgctgcaaataaaatgatgaattaatacgtggtggaaggataaaaagatataagtgg 22816342  T
Q  166 gttttgac 173  Q
    ||||||||    
T  22816343 gttttgac 22816350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 301 - 515
Target Start/End: Original strand, 22886610 - 22886824
Alignment:
Q  301 atactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaattt 400  Q
    ||||||||||||||||  |||| ||| ||| |||| ||||||| |||| |||| |||||||||||||| || ||  ||| |||||||||| |||    ||    
T  22886610 atactatcaatttatctaagaatatgaaaattaactttgaatgcacttttataaaaagggtaatttagaaatagtaacacacatttcagacaaatttatt 22886709  T
Q  401 actccaaagacttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacgaaggaaannnnnnncttcttgcaaaaatcgaggcgaaatt 500  Q
    |||| |||||||||| ||| ||| ||||| ||||||||||||||||| |||||||||| | ||| ||       |||| ||||||||||  || ||||||    
T  22886710 actcgaaagactttttttagtacccgtgatttttgtaaagtgttcttctaaaaaaggatggagggaaaatttttcttcatgcaaaaatcatggtgaaatt 22886809  T
Q  501 tcgagccacaggttc 515  Q
    |||||||||| ||||    
T  22886810 tcgagccacatgttc 22886824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 22886423 - 22886524
Alignment:
Q  75 tgaatgtgtggacttgacaagttactatt-------gattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgtttgt 167  Q
    |||||||||||||||||| ||||||||||       ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  22886423 tgaatgtgtggacttgaccagttactattgattattgattatgcttcaaatcaaatgatgaatgaatatgtggtggaaagataaaaagatatatgttggt 22886522  T
Q  168 tt 169  Q
    ||    
T  22886523 tt 22886524  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 22810585 - 22810690
Alignment:
Q  67 ttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagatatatgtttg 166  Q
    |||| |||||||| |||| |||| |  |||||||||||||| |||||||||| ||||||| |||||||| ||||| ||||||| |||||||||||||| |    
T  22810585 ttcacacttgaatatgtgcactttagcagttactattgattttgctgcaaataaaatgattaatgaatacgtggttgaaggat-aaaagatatatgttgg 22810683  T
Q  167 ttttgac 173  Q
    |||||||    
T  22810684 ttttgac 22810690  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 22843080 - 22843135
Alignment:
Q  66 tttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaa 121  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22843080 tttcacacttgaatgtgtggacttgaccagttactattgattatgctgcaaatcaa 22843135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 22843134 - 22843214
Alignment:
Q  77 aatgtgtggacttgacaagttactattgattatgctgcaaatcaaatgatgaatgaatatgtggtggaaggataaaaagat 157  Q
    |||||||||| ||| |  ||||| |||||||||||||||||| |||||||||||||||| || |||||| |||||||||||    
T  22843134 aatgtgtggaattggccggttaccattgattatgctgcaaataaaatgatgaatgaatacgttgtggaaagataaaaagat 22843214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 22874013 - 22874070
Alignment:
Q  66 tttcaaacttgaatgtgtggacttgacaagttactattgattatgctgcaaatcaaat 123  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||| |||| ||||    
T  22874013 tttcacacttgaatgtgtggacttgaccggttactattgattatgctgtaaataaaat 22874070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22841502 - 22841545
Alignment:
Q  1 aattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctt 44  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  22841502 aattgaatatgtgaaattaaaacatcaatgtcgtctaatttctt 22841545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22894811 - 22894854
Alignment:
Q  1 aattgaatgtgtgaaattaaaacatcaatgtcgtctaaattctt 44  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  22894811 aattgaatatgtgaaattaaaacatcaatgtcgtctaatttctt 22894854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22859215 - 22859261
Alignment:
Q  1 aattgaatgtgtgaaattaaaacatcaatgtcgtctaaattcttaaa 47  Q
    |||||||| |||||||||||||||| ||||| |||||| ||||||||    
T  22859215 aattgaatatgtgaaattaaaacattaatgttgtctaatttcttaaa 22859261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 460
Target Start/End: Original strand, 35877111 - 35877242
Alignment:
Q  328 aaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttactccaaagacttttcttaatacacgt 427  Q
    |||||||||||||||||| |||||||||||||||||| ||| || || || | |||||| ||| |||    | ||||||   |||||| |||||||  ||    
T  35877111 aaaataacattgaatgtatttatatacaaagggtaatctagtaatagttatacacattttagacaaatttatcactccagcaacttttattaatacctgt 35877210  T
Q  428 gacttttgtaaagtgttcttataaaaaaggacg 460  Q
     | |||||||||||||||||||||||| |||||    
T  35877211 -atttttgtaaagtgttcttataaaaagggacg 35877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21149861 - 21149819
Alignment:
Q  1 aattgaatgtgtgaaattaaaacatcaatgtcgtctaaattct 43  Q
    |||||||| ||||||||||||||||||||||||||||| ||||    
T  21149861 aattgaatatgtgaaattaaaacatcaatgtcgtctaatttct 21149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 897310 - 897241
Alignment:
Q  296 tattaatactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatt 365  Q
    ||||||||||||| ||||||| | ||| ||| ||| ||||||| |||||| |||| ||||||| ||||||    
T  897310 tattaatactatctatttatcttggaatatgaaaagtaacattaaatgtatttatgtacaaagagtaatt 897241  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 459
Target Start/End: Original strand, 4523922 - 4524154
Alignment:
Q  222 tgtccttaaatataagactcactacaaattactaaatgcatttgttatttttcttcttctttctaatatacccct-attaatactatcaatttatcatag 320  Q
    ||||| |||||||||||||| ||||||||||||| |||||||| | | | || |||      | | ||||||||| |||||||| ||| | ||||| | |    
T  4523922 tgtccctaaatataagactcgctacaaattactagatgcatttatcactctttttc------caattataccccttattaataccatctaattatcttgg 4524015  T
Q  321 aaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagataaaaaatttactccaaagacttttcttaa 420  Q
    || |||  || ||| |||||||| | |||| |||||||| |||||||| || ||  ||| |||||||||| |||    |||||||||  |||||||||||    
T  4524016 aatatgataagtaatattgaatgcatttatctacaaaggataatttagtaatagtcacacacatttcagacaaatttattactccaacaacttttcttaa 4524115  T
Q  421 tacacgtgacttttgtaaagtgttcttataaaaaaggac 459  Q
    ||| ||||  |||| || ||||||||||| |||| ||||    
T  4524116 tacccgtgttttttttagagtgttcttattaaaagggac 4524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 368
Target Start/End: Complemental strand, 52934570 - 52934488
Alignment:
Q  287 atatacccct-attaatactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttag 368  Q
    |||||||||| |||||||| ||||||| ||| | ||| ||| ||| |||||||||||||| ||||| ||||||| ||||||||    
T  52934570 atataccccttattaatacaatcaattcatcttggaatatgaaaagtaacattgaatgtatttataaacaaaggataatttag 52934488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 3242 - 3152
Alignment:
Q  302 tactatcaatttatcatagaaaatgcaaaataacattgaatgtacttatatacaaagggtaatttagcaacagatacatacatttcagata 392  Q
    |||||| |||||||| |  || ||| ||||||||||| ||| || ||||| ||||| | |||||||| ||||||  |||||||||||||||    
T  3242 tactattaatttatcttgaaatatgaaaaataacattaaatatatttatacacaaatgataatttagtaacagacgcatacatttcagata 3152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 42447348 - 42447390
Alignment:
Q  228 taaatataagactcactacaaattactaaatgcatttgttatt 270  Q
    ||||||||||||||| |||||||||||| |||||||| |||||    
T  42447348 taaatataagactcattacaaattactagatgcatttattatt 42447390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 460
Target Start/End: Complemental strand, 29675606 - 29675556
Alignment:
Q  410 acttttcttaatacacgtgacttttgtaaagtgttcttataaaaaaggacg 460  Q
    |||||||||||||| ||||| |||||||||||  ||||||||||| |||||    
T  29675606 acttttcttaatactcgtgatttttgtaaagtaatcttataaaaagggacg 29675556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 455
Target Start/End: Complemental strand, 35984887 - 35984842
Alignment:
Q  410 acttttcttaatacacgtgacttttgtaaagtgttcttataaaaaa 455  Q
    |||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  35984887 acttatcttaatacccgtgatttttgtaaagtgttctaataaaaaa 35984842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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