View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7604_high_4 (Length: 387)

Name: NF7604_high_4
Description: NF7604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7604_high_4
NF7604_high_4
[»] scaffold0386 (2 HSPs)
scaffold0386 (119-368)||(675-923)
scaffold0386 (136-185)||(1284-1333)
[»] chr4 (3 HSPs)
chr4 (120-368)||(33879030-33879268)
chr4 (19-119)||(46550522-46550615)
chr4 (116-185)||(33878600-33878669)
[»] chr5 (4 HSPs)
chr5 (120-368)||(27641246-27641494)
chr5 (118-350)||(13869661-13869892)
chr5 (119-185)||(27640854-27640920)
chr5 (140-185)||(13869240-13869285)
[»] chr7 (3 HSPs)
chr7 (118-368)||(29735099-29735350)
chr7 (137-192)||(8721235-8721290)
chr7 (143-185)||(29735715-29735759)
[»] chr3 (2 HSPs)
chr3 (136-368)||(49850835-49851069)
chr3 (136-181)||(49851426-49851471)
[»] chr8 (2 HSPs)
chr8 (114-319)||(38460745-38460951)
chr8 (136-178)||(38460427-38460469)


Alignment Details
Target: scaffold0386 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 119 - 368
Target Start/End: Original strand, 675 - 923
Alignment:
Q  119 agagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||| ||||||    
T  675 agagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcattatt-tttttttatttaaaaaaaatga 773  T
Q  219 aaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatattt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  774 aaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatattt 873  T
Q  319 ctctaatagtgtttgtgaaaatctaggaacatgttcatcaaccttaaaaa 368  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||    
T  874 ctttaatagtgtttgtgaaaatctaggaacatgttcatcaaccttaaaaa 923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 1333 - 1284
Alignment:
Q  136 gaaacgtacataacatgtggcacttacaaacatccaataaaatcatgaca 185  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1333 gaaacgtacataacatgtgacacttacaaacatccaataaaatcatgaca 1284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 120 - 368
Target Start/End: Complemental strand, 33879268 - 33879030
Alignment:
Q  120 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||           | |||| |||||||    
T  33879268 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattata----------taaaaaaaaatgaa 33879179  T
Q  220 aatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879178 aatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttc 33879079  T
Q  320 tctaatagtgtttgtgaaaatctaggaacatgttcatcaaccttaaaaa 368  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  33879078 tttaatagtgtttgtgaaaatctaggaacatgttcatcaaccttaaaaa 33879030  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 46550522 - 46550615
Alignment:
Q  19 gattaggctttttatactagggctaactcattattatttattacacaatcaacattaaaaggtagactttgtttttaagtagtgtttatctttataaact 118  Q
    |||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46550522 gattaggctttttataatagggctaactcattat-------tacacaatcaacattaaaaggtagactttgtttttaagtagtgtttatctttataaact 46550614  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 33878600 - 33878669
Alignment:
Q  116 actagagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaataaaatcatgaca 185  Q
    |||||||||||  || ||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33878600 actagagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 33878669  T

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Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 120 - 368
Target Start/End: Complemental strand, 27641494 - 27641246
Alignment:
Q  120 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaa 219  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||         || |||| |||||||    
T  27641494 gagaaatttttacatagaaacgtacatatcatgtggcacttacaaacattcaatgaaatcatgacatatcattattttttttaatttaaaaaaaaatgaa 27641395  T
Q  220 aatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttc 319  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27641394 aatagaaacagaaccatcgtcatccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttc 27641295  T
Q  320 tctaatagtgtttgtgaaaatctaggaacatgttcatcaaccttaaaaa 368  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27641294 tctattagtgtttctgaaaatctaggaacatgttcatcaaccttaaaaa 27641246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 118 - 350
Target Start/End: Complemental strand, 13869892 - 13869661
Alignment:
Q  118 tagagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatg 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||        |||||||| |||||    
T  13869892 tagagaaatttttacatagaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcattatt-ttttttaatttaaaaaaaatg 13869794  T
Q  218 aaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatt 317  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13869793 aaaatagaaacagaaccatcgtcatccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatt 13869694  T
Q  318 tctctaatagtgtttgtgaaaatctaggaacat 350  Q
    |||||| |||||||| |||||||||||||||||    
T  13869693 tctctattagtgtttctgaaaatctaggaacat 13869661  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 27640854 - 27640920
Alignment:
Q  119 agagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaataaaatcatgaca 185  Q
    ||||||||  || ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  27640854 agagaaatacttgcatagaagcgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 27640920  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 13869240 - 13869285
Alignment:
Q  140 cgtacataacatgtggcacttacaaacatccaataaaatcatgaca 185  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  13869240 cgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 13869285  T

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Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 118 - 368
Target Start/End: Original strand, 29735099 - 29735350
Alignment:
Q  118 tagagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaat- 216  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||| ||||     
T  29735099 tagagaaattcttacatagaaacttacataacatgtggcacttacaaacatccaataaaattatgacatatcattatt-ttttttaatttaaaaaaaata 29735197  T
Q  217 -gaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttata 315  Q
     |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  29735198 tgaaaatagaaacagaaccatcgtcattcttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgtttaata 29735297  T
Q  316 tttctctaatagtgtttgtgaaaatctaggaacatgttcatcaaccttaaaaa 368  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29735298 tttctctaatagtgtttatgaaaatctaggaacatgttcatcaaccttaaaaa 29735350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 8721290 - 8721235
Alignment:
Q  137 aaacgtacataacatgtggcacttacaaacatccaataaaatcatgacatatcatt 192  Q
    ||||| |||||||| |||||| ||| ||||||||||||||| |||||||| |||||    
T  8721290 aaacgaacataacacgtggcatttagaaacatccaataaaaacatgacatgtcatt 8721235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 29735759 - 29735715
Alignment:
Q  143 acataacatgtggcacttacaaac--atccaataaaatcatgaca 185  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||    
T  29735759 acataacatgtggcacttacaaacatatccaatgaaatcatgaca 29735715  T

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Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 136 - 368
Target Start/End: Original strand, 49850835 - 49851069
Alignment:
Q  136 gaaacgtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaacca 235  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |        ||| |||| ||||||||||||||||| |||||    
T  49850835 gaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcattact-ttttttaattaaaaaaaaatgaaaatagaaacataacca 49850933  T
Q  236 tcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtg 335  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  49850934 tcgtcatccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtatttctg 49851033  T
Q  336 aaaatctaggaacatgttc---atcaaccttaaaaa 368  Q
    |||||||||||||||||||   ||||||||||||||    
T  49851034 aaaatctaggaacatgttcaatatcaaccttaaaaa 49851069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 49851471 - 49851426
Alignment:
Q  136 gaaacgtacataacatgtggcacttacaaacatccaataaaatcat 181  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||    
T  49851471 gaaacatacataacatgtggcacttacaaacatccaatgaaatcat 49851426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 114 - 319
Target Start/End: Complemental strand, 38460951 - 38460745
Alignment:
Q  114 aaactagagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaaca 213  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||| |    
T  38460951 aaacaagagaaatttttacatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcattatttatttttaatttaaaaaa 38460852  T
Q  214 aa-tgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgtttt 312  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  38460851 aaatgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactaaatctatgttcttgtttt 38460752  T
Q  313 atatttc 319  Q
    |||||||    
T  38460751 atatttc 38460745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 38460427 - 38460469
Alignment:
Q  136 gaaacgtacataacatgtggcacttacaaacatccaataaaat 178  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  38460427 gaaacgtacataacatgtggcacttacaaacatccaatgaaat 38460469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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