View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7604_low_2 (Length: 425)
Name: NF7604_low_2
Description: NF7604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7604_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 232 - 399
Target Start/End: Original strand, 8518598 - 8518763
Alignment:
| Q |
232 |
ccttagataaaattacttggttagagaacttcttaattatgacatatgggttatgccccattttcataatctatggttttataaggaattggaatatgaa |
331 |
Q |
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| T |
8518598 |
ccttagataaaattactttgttagagaacttcttaattatgacatatgggttatgccccattttcagaatctatggttttataaggaattggaatatgaa |
8518697 |
T |
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| Q |
332 |
ttatgaaacagaagctggctgagtacagaatatgatatttgcctcagaaagttattaagatgaagact |
399 |
Q |
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| T |
8518698 |
ttatgaaacagaagctggctgag--cagaatatgatatttgcctcagaaagttattaagatgaagact |
8518763 |
T |
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Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 8518385 - 8518553
Alignment:
| Q |
20 |
ctttcaaatattgcttaaaccagtttaaaccaaacagaacaacatacgataacatagtannnnnnnnngttaannnnnnntccggttctcggttgaagag |
119 |
Q |
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| T |
8518385 |
ctttcaaatattgctaaaaccagtttaaaccaaacagaacaacatacgataacatagt-tttttttttgttaaccccccctccggttcttggtagaagag |
8518483 |
T |
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| Q |
120 |
gtcattggcaatgatagtatggaatttgtttgagagttaagtaaagtcttgctaaaaattgtttcacttg |
189 |
Q |
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| T |
8518484 |
gtcattggcattgacagtatggaatttgtttgagagttaagtaaaatcttgttaaaaattgtttcacttg |
8518553 |
T |
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