View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7604_low_3 (Length: 397)
Name: NF7604_low_3
Description: NF7604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7604_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 52071173 - 52071543
Alignment:
| Q |
16 |
caaatctgtggatagtccttttttcgcatctgaaaatgacaaaaattcattaccattctccatttggttgttactcattgaatcactatccctgctatca |
115 |
Q |
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| T |
52071173 |
caaatctgtggatagtccttttttcgcatctgaaaatgacaaaaattcattaccattctccatttggttgttactcattgaatcactatccctgctatca |
52071272 |
T |
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| Q |
116 |
acatgcattgatggctttgtttttgtctctgtctcaactttgttctgcaaattctgcattgttgatgagttagggagtgaattcatgaataataccttag |
215 |
Q |
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| T |
52071273 |
acatgcattgatggctttgtttttgtctctgtctcaactttgttctgcaaattctgcattgttgatgagttagggagtgaattcatgaataataccttag |
52071372 |
T |
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| Q |
216 |
agcacttggtagcttttgtacgaacaacatgtgagtttggcaccattggtttaggattgttctgtttatgtgcgatctttgcattttttggagtagagtt |
315 |
Q |
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| T |
52071373 |
agcacttggtagcttttgtacgaacaacatgtgagtttggcaccattggtttaggattgttctgtttatgtgcgatctttgcattttttggagtagagtt |
52071472 |
T |
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| Q |
316 |
gttggtgttttgttgttggagatctttaaccttttttcctaaattcgtgttccaataattcttgatttcat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52071473 |
gttggtgttttgttgttggagatctttaaccttttttcctaaattcgtgttccaataattcttgatttcat |
52071543 |
T |
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