View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7604_low_5 (Length: 361)
Name: NF7604_low_5
Description: NF7604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7604_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 53 - 319
Target Start/End: Complemental strand, 24642114 - 24641848
Alignment:
| Q |
53 |
atcaaaacagaatgactacgcataacaacaaatcttattttattcttatgggtttgttggtaactttagcgggaactaagtatgaagctataaacaataa |
152 |
Q |
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||||||||||||||| ||||| ||| ||||| |||| ||| |||| |||||||||||||| |||||||| |||||||||||||||| |||||| || |
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| T |
24642114 |
atcaaaacagaatgattacgcgtaattacaaagcttacttttttctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaacaccaa |
24642015 |
T |
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| Q |
153 |
cccatttaaaccactatccccaactatgttactgtttttgacatctttatgttgtcacgcagtttcatccacagctgatatgagcttgtcagctactata |
252 |
Q |
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||| ||| |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24642014 |
cccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagctactata |
24641915 |
T |
|
| Q |
253 |
tatatctttcacatttctggtgttgttggatgtgagacgcttctgtggataatcctttctcagatct |
319 |
Q |
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| T |
24641914 |
tatatctttcacttttctggtgttgttggatgtgagacacttttgtggataatcctttctcagatct |
24641848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 53 - 315
Target Start/End: Complemental strand, 24693483 - 24693221
Alignment:
| Q |
53 |
atcaaaacagaatgactacgcataacaacaaatcttattttattcttatgggtttgttggtaactttagcgggaactaagtatgaagctataaacaataa |
152 |
Q |
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||||||||||||||| ||||||||| ||||| ||||||||||| | |||||||||||||| | |||||| |||||||||||||||| |||||| ||| |
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| T |
24693483 |
atcaaaacagaatgattacgcataattacaaagcttattttattttgatgggtttgttggtgaatttagcttcaactaagtatgaagctttaaacactaa |
24693384 |
T |
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| Q |
153 |
cccatttaaaccactatccccaactatgttactgtttttgacatctttatgttgtcacgcagtttcatccacagctgatatgagcttgtcagctactata |
252 |
Q |
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| T |
24693383 |
cccatttaaaccactatctccaactatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgccagctactata |
24693284 |
T |
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| Q |
253 |
tatatctttcacatttctggtgttgttggatgtgagacgcttctgtggataatcctttctcag |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||| |||||| |
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| T |
24693283 |
tatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctctctcag |
24693221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 215 - 348
Target Start/End: Complemental strand, 24720867 - 24720734
Alignment:
| Q |
215 |
tttcatccacagctgatatgagcttgtcagctactatatatatctttcacatttctggtgttgttggatgtgagacgcttctgtggataatcctttctca |
314 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24720867 |
tttcatccacagctgatatgagcttgccagctactatatatatctttcacatttctggtgttgttggatgtgagacgcttctgtggataatcctttctca |
24720768 |
T |
|
| Q |
315 |
gatctggaggaattggtttatcattaacttattc |
348 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
24720767 |
gatctggaggaattggtttatcattaacttattc |
24720734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 86 - 281
Target Start/End: Original strand, 24733205 - 24733406
Alignment:
| Q |
86 |
cttattttattcttatgggtttgttggtaactttagcgggaactaagtatgaagctataaacaata------acccatttaaaccactatccccaactat |
179 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||| | ||| |||||||||||| |||| | || |||||||| ||||| |||||||||| | |
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| T |
24733205 |
cttattttattctaatgggcatgttggtggctttagctgcaacgaagtatgaagctttaaaaactagtactaacccatttcaaccatcatccccaacttt |
24733304 |
T |
|
| Q |
180 |
gttactgtttttgacatctttatgttgtcacgcagtttcatccacagctgatatgagcttgtcagctactatatatatctttcacatttctggtgttgtt |
279 |
Q |
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||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24733305 |
gttgctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacatttctggtgttgtt |
24733404 |
T |
|
| Q |
280 |
gg |
281 |
Q |
| |
|
|| |
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|
| T |
24733405 |
gg |
24733406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 24648917 - 24648653
Alignment:
| Q |
21 |
tatacacttttcttctctttttgtttcctccgatcaaaacagaatgactacgcataacaac---aaatcttattttattcttatgggtttgttggtaact |
117 |
Q |
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|||||||||||||||||||||||||| |||| ||||||| | ||||| ||||||||| || ||| |||||||||||| |||||||||||||| || |
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| T |
24648917 |
tatacacttttcttctctttttgttttctccaatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcct |
24648818 |
T |
|
| Q |
118 |
ttagcgggaact-aagtatgaagctataaacaataacccatttaaaccactatccccaactatgttactgtttttgacatctttatgttgtcacgcagtt |
216 |
Q |
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||||| | || || ||| ||| | |||||| ||||||||| |||||| | || ||| ||| ||||||||||||||||| ||| | |||| |||||| |
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| T |
24648817 |
ttagctgcaatggaaatatcaaggtttaaacactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagtt |
24648718 |
T |
|
| Q |
217 |
tcatccacagctgatatgagcttgtcagctactatatatatctttcacatttctggtgttgttgg |
281 |
Q |
| |
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||| ||||||||| |||||||| || ||||||||||||||||||| || || ||||||||||| |
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| T |
24648717 |
gcattcacagctgacatgagcttcccaactactatatatatctttcatatctccggtgttgttgg |
24648653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 24694569 - 24694467
Alignment:
| Q |
53 |
atcaaaacagaatgactacgcataacaacaaatcttattttattcttatgggtttgttggtaactttagcgggaactaagtatgaagctataaacaataa |
152 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |||||| ||| |
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| T |
24694569 |
atcaaaacagaatgattacgcgtaattacaaagcttattttattctgatgggtttgttggtgtctttagcttcaactaagtatgaagctttaaacactaa |
24694470 |
T |
|
| Q |
153 |
ccc |
155 |
Q |
| |
|
||| |
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|
| T |
24694469 |
ccc |
24694467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 302
Target Start/End: Complemental strand, 24656536 - 24656401
Alignment:
| Q |
167 |
tatccccaactatgttactgtttttgacatctttatgttgtcacgcagtttcatccacagctgatatgagcttgtcagctactatatatatctttcacat |
266 |
Q |
| |
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|||||||| |||||| ||||||||||| || || |||||| |||||| || ||| ||||| |||||||| | ||||||| | || |||||| | |
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| T |
24656536 |
tatccccacttatgttgctgtttttgactgctagattttgtcatgcagttgcaaccatggctgacatgagcttcctaactactatgttcatatttcactt |
24656437 |
T |
|
| Q |
267 |
ttctggtgttgttggatgtgagacgcttctgtggat |
302 |
Q |
| |
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|||||||||| ||||||||||||| ||||| ||||| |
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| T |
24656436 |
ttctggtgttattggatgtgagacacttctttggat |
24656401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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