View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7604_low_6 (Length: 294)
Name: NF7604_low_6
Description: NF7604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7604_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 5015667 - 5015404
Alignment:
| Q |
16 |
tgtgaaaggctttgatatttctaaacctcattcctcatatactttaaggtttacaacatttgtttcagttgagctagcgta-ttttattgtaactataac |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5015667 |
tgtgaaagactttgatatttctaaacctcattcctcatatacgttaaggtttacaacatttgtttcagttgagctagcgtaattttattgtaactataac |
5015568 |
T |
|
| Q |
115 |
cacatcaaaattgctttatcattgctacaatatcatcaaataatcatatctggataagaggaaacgatccatgatatgtgtttgtaagaatggactacgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5015567 |
cacatcaaaattgctttatcattgcttcaatatcatcaaataatcatatctggataagaggaaacgatccatgatatgtgtttgtaagaatggactacgc |
5015468 |
T |
|
| Q |
215 |
aagagatttaatgagcacctcgcgacctgctgaagatataagaatttatcctgccaacctttct |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5015467 |
aagagatttaatgagcacctcgcgacctgctgaagatataagaatttatcctgccaacctttct |
5015404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University